Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3281

Experiment: Nitrate reduction, replicate B t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B t2
3,667,698	+		Pf1N1B4_3280	0.27	-0.0
3,667,698	+		Pf1N1B4_3280	0.27	-0.0
3,667,749	+		Pf1N1B4_3280	0.32	-1.3
3,667,749	+		Pf1N1B4_3280	0.32	-0.0
3,667,751	+		Pf1N1B4_3280	0.32	-0.0
3,667,751	+		Pf1N1B4_3280	0.32	-2.0
3,667,751	+		Pf1N1B4_3280	0.32	-0.0
3,667,751	+		Pf1N1B4_3280	0.32	-1.4
3,667,751	+		Pf1N1B4_3280	0.32	-0.0
3,667,752	-		Pf1N1B4_3280	0.32	-0.0
3,667,833	+		Pf1N1B4_3280	0.40	-0.0
3,667,833	+		Pf1N1B4_3280	0.40	-1.0
3,667,833	+		Pf1N1B4_3280	0.40	-0.0
3,667,858	+		Pf1N1B4_3280	0.42	-2.1
3,667,914	+		Pf1N1B4_3280	0.47	-0.0
3,667,914	+		Pf1N1B4_3280	0.47	-0.0
3,667,915	-		Pf1N1B4_3280	0.47	-0.0
3,667,998	+		Pf1N1B4_3280	0.55	-2.2
3,667,998	+				-0.6
3,667,999	-		Pf1N1B4_3280	0.55	-0.0
3,668,011	+		Pf1N1B4_3280	0.56	-3.5
3,668,105	+				-0.0
3,668,105	+		Pf1N1B4_3280	0.65	-2.4
3,668,106	-		Pf1N1B4_3280	0.65	-0.0
3,668,195	+		Pf1N1B4_3280	0.73	-0.0
3,668,195	+		Pf1N1B4_3280	0.73	-0.0
3,668,196	-		Pf1N1B4_3280	0.73	-0.0
3,668,270	+		Pf1N1B4_3280	0.80	-0.0
3,668,301	+		Pf1N1B4_3280	0.83	-0.0
3,668,302	-		Pf1N1B4_3280	0.83	-0.0
3,668,302	-		Pf1N1B4_3280	0.83	-0.0
3,668,373	+		Pf1N1B4_3280	0.90	-0.0
3,668,373	+		Pf1N1B4_3280	0.90	-1.9
3,668,373	+				-0.0
3,668,373	+		Pf1N1B4_3280	0.90	-0.0
3,668,373	+		Pf1N1B4_3280	0.90	-0.0
3,668,373	+		Pf1N1B4_3280	0.90	-0.0
3,668,374	-		Pf1N1B4_3280	0.90	-1.5
3,668,439	+				-0.0
3,668,445	+				-0.0
3,668,445	+				-2.0
3,668,478	+				-0.0
3,668,478	+				-1.0
3,668,478	+				-0.0
3,668,478	+				-2.3
3,668,479	-				+1.3
3,668,490	-				-3.1
3,668,490	-				-2.9
3,668,490	-				-4.1
3,668,498	+				-1.6
3,668,499	-				-1.7
3,668,586	+				-0.0
3,668,617	+				-0.0
3,668,640	-				-1.1
3,668,653	+				-0.0
3,668,653	+				-0.0
3,668,682	+				-0.0
3,668,682	+				-0.0
3,668,682	+				-0.0
3,668,682	+				-0.0
3,668,682	+				-0.0
3,668,682	+				-0.0
3,668,682	+				-0.0
3,668,682	+				-1.0
3,668,683	-				-0.0
3,668,683	-				-1.7
3,668,683	-				-2.4
3,668,683	-				-0.0
3,668,683	-				-0.0
3,668,683	-				-0.0
3,668,683	-				-0.0
3,668,683	-				-0.0
3,668,686	+				-0.0
3,668,687	-				-1.0
3,668,687	-				-2.6
3,668,687	-				-0.0
3,668,726	+				-2.8
3,668,726	+				-0.0
3,668,727	-				-0.0
3,668,727	-				-0.0
3,668,727	-				-0.0
3,668,814	-		Pf1N1B4_3281	0.23	-2.7
3,668,947	+		Pf1N1B4_3281	0.48	-0.0
3,668,948	-		Pf1N1B4_3281	0.48	-0.0
3,668,955	+		Pf1N1B4_3281	0.49	-0.0
3,668,955	+		Pf1N1B4_3281	0.49	-5.2
3,668,955	+		Pf1N1B4_3281	0.49	-4.6
3,668,955	+		Pf1N1B4_3281	0.49	-1.7
3,668,956	-		Pf1N1B4_3281	0.49	-2.0
3,668,956	-		Pf1N1B4_3281	0.49	-0.0
3,668,956	-		Pf1N1B4_3281	0.49	-2.8
3,668,956	-		Pf1N1B4_3281	0.49	-0.0
3,668,956	-		Pf1N1B4_3281	0.49	-3.6
3,669,066	+		Pf1N1B4_3281	0.70	-5.1
3,669,178	-				-4.8
3,669,192	+				-4.2
3,669,193	-				-2.5
3,669,210	+				-2.6
3,669,210	+				-4.0
3,669,211	-				-0.0
3,669,361	-				-0.0
3,669,361	-				-0.0
3,669,440	+		Pf1N1B4_3282	0.17	-0.0
3,669,440	+		Pf1N1B4_3282	0.17	-2.5
3,669,440	+		Pf1N1B4_3282	0.17	-0.0
3,669,441	-		Pf1N1B4_3282	0.17	-0.0
3,669,441	-		Pf1N1B4_3282	0.17	-2.1
3,669,441	-		Pf1N1B4_3282	0.17	-0.0
3,669,441	-		Pf1N1B4_3282	0.17	-0.0
3,669,441	-		Pf1N1B4_3282	0.17	-0.0
3,669,441	-		Pf1N1B4_3282	0.17	-0.0
3,669,480	-		Pf1N1B4_3282	0.25	-0.0
3,669,504	+		Pf1N1B4_3282	0.30	-1.5
3,669,504	+		Pf1N1B4_3282	0.30	-0.0
3,669,504	+		Pf1N1B4_3282	0.30	-3.3
3,669,505	-		Pf1N1B4_3282	0.30	-0.0
3,669,505	-		Pf1N1B4_3282	0.30	-0.0
3,669,743	+		Pf1N1B4_3282	0.77	-2.4
3,669,743	+		Pf1N1B4_3282	0.77	-0.0
3,669,743	+				-0.0
3,669,743	+		Pf1N1B4_3282	0.77	-0.0
3,669,743	+		Pf1N1B4_3282	0.77	-3.7
3,669,743	+		Pf1N1B4_3282	0.77	-0.0
3,669,743	+		Pf1N1B4_3282	0.77	-1.7
3,669,744	-		Pf1N1B4_3282	0.77	-0.0
3,669,744	-		Pf1N1B4_3282	0.77	-0.2
3,669,744	-		Pf1N1B4_3282	0.77	-0.0
3,669,744	-		Pf1N1B4_3282	0.77	-1.7
3,669,744	-		Pf1N1B4_3282	0.77	-1.5
3,669,744	-		Pf1N1B4_3282	0.77	-0.0
3,669,744	-		Pf1N1B4_3282	0.77	-1.7
3,669,744	-		Pf1N1B4_3282	0.77	-1.7
3,669,838	+				-0.0
3,669,838	+				-1.3
3,669,839	-				+0.2
3,669,839	-				-1.3
3,669,839	-				-2.1
3,669,858	+				-1.6
3,669,858	+				-1.8
3,669,858	+				-0.0
3,669,858	+				-0.0
3,669,858	+				-0.0
3,669,858	+				-1.1
3,669,858	+				-0.0
3,669,858	+				-1.1
3,669,859	-				-0.0
3,669,859	-				-0.0
3,669,859	-				-0.0
3,669,859	-				-2.0
3,669,859	-				-0.4
3,669,859	-				-0.0
3,669,859	-				-2.0
3,669,859	-				-2.0
3,669,859	-				-1.5
3,669,861	+				-1.9
3,669,861	+				-0.0
3,669,861	+				-0.0
3,669,861	+				-2.5
3,669,861	+				-1.3
3,669,861	+				-0.0
3,669,861	+				-0.0
3,669,862	-				-0.0
3,669,862	-				-0.0
3,669,862	-				-1.0
3,669,875	+				-1.8
3,669,894	+				-1.3
3,669,894	+				-0.0
3,669,894	+				-0.0
3,669,895	-				-0.0
3,669,895	-				-0.0
3,669,895	-				-0.0
3,669,895	-				-1.8
3,669,895	-				-0.0
3,669,936	+				-0.8
3,669,936	+				-2.0
3,669,936	+				-0.0
3,670,035	+				-0.0
3,670,036	-				-2.0
3,670,036	-				-2.3
3,670,036	-				-1.8
3,670,036	-				-1.3
3,670,036	-				-0.0
3,670,036	-				-0.0
3,670,036	-				-2.1
3,670,036	-				-0.0
3,670,036	-				-0.0
3,670,049	-				-0.0
3,670,101	+				-1.2
3,670,101	+				-0.0
3,670,101	+				-0.0
3,670,102	-				-0.0
3,670,102	-				-1.4
3,670,102	-				-0.0
3,670,102	-				-0.0
3,670,102	-				-2.4
3,670,189	+				-0.0
3,670,189	+				-0.0
3,670,190	-				-0.0