Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3222

Experiment: Nitrate reduction, replicate B t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B t2
3,606,567	+		Pf1N1B4_3221	0.74	-0.0
3,606,567	+		Pf1N1B4_3221	0.74	-0.0
3,606,567	+		Pf1N1B4_3221	0.74	-0.0
3,606,567	+		Pf1N1B4_3221	0.74	-0.0
3,606,567	+		Pf1N1B4_3221	0.74	-1.9
3,606,567	+		Pf1N1B4_3221	0.74	-3.6
3,606,567	+		Pf1N1B4_3221	0.74	-3.6
3,606,568	-		Pf1N1B4_3221	0.74	-0.0
3,606,568	-		Pf1N1B4_3221	0.74	-0.0
3,606,568	-		Pf1N1B4_3221	0.74	-1.0
3,606,684	+		Pf1N1B4_3221	0.80	-2.5
3,606,685	-		Pf1N1B4_3221	0.80	-0.0
3,606,685	-		Pf1N1B4_3221	0.80	-3.3
3,606,726	+		Pf1N1B4_3221	0.81	-2.2
3,606,726	+		Pf1N1B4_3221	0.81	-3.2
3,606,726	+		Pf1N1B4_3221	0.81	-0.0
3,606,726	+				-3.7
3,606,727	-		Pf1N1B4_3221	0.81	-1.4
3,606,727	-		Pf1N1B4_3221	0.81	-0.0
3,606,727	-		Pf1N1B4_3221	0.81	-0.0
3,606,727	-		Pf1N1B4_3221	0.81	-0.0
3,606,727	-		Pf1N1B4_3221	0.81	-0.0
3,606,727	-		Pf1N1B4_3221	0.81	-0.0
3,606,727	-		Pf1N1B4_3221	0.81	-2.0
3,606,727	-		Pf1N1B4_3221	0.81	-0.0
3,606,774	+		Pf1N1B4_3221	0.83	-0.0
3,606,774	+		Pf1N1B4_3221	0.83	-0.0
3,607,053	+				-0.0
3,607,079	-				-0.0
3,607,094	+				-0.0
3,607,095	-				-0.0
3,607,095	-				-1.7
3,607,095	-				-0.0
3,607,095	-				-2.8
3,607,152	-				-1.9
3,607,213	-				-0.0
3,607,213	-				-0.0
3,607,213	-				-0.0
3,607,213	-				-0.0
3,607,214	+				-0.0
3,607,214	+				-1.8
3,607,214	+				-0.0
3,607,214	+				-1.9
3,607,214	+				-0.0
3,607,215	-				-0.0
3,607,294	+				-0.0
3,607,295	-				-0.0
3,607,316	+				-0.0
3,607,317	-				-0.0
3,607,480	+		Pf1N1B4_3222	0.67	-3.8
3,607,480	+		Pf1N1B4_3222	0.67	-0.0
3,607,481	-		Pf1N1B4_3222	0.67	-0.0
3,607,720	+				-1.0
3,607,720	+				-0.0
3,607,721	-				-0.0
3,607,721	-				-1.7
3,607,721	-				-0.0
3,607,758	+				-0.0
3,607,758	+				-2.3
3,607,759	-				-1.8
3,607,897	+				-1.3
3,607,897	+				-2.7
3,607,897	+				-1.9
3,607,898	-				-1.5
3,607,898	-				-2.0
3,607,980	+				-1.6
3,607,980	+				-0.0
3,607,980	+				-0.0
3,607,981	-				-0.0
3,607,981	-				-0.0
3,607,981	-				-0.0
3,607,981	-				-0.0
3,607,981	-				-1.3
3,607,981	-				-2.0
3,608,014	+				-0.0
3,608,015	-				-2.8
3,608,015	-				-1.3
3,608,270	+		Pf1N1B4_3223	0.17	-0.1
3,608,270	+		Pf1N1B4_3223	0.17	-0.1
3,608,271	-		Pf1N1B4_3223	0.17	-1.9
3,608,383	+		Pf1N1B4_3223	0.26	-0.1
3,608,384	-		Pf1N1B4_3223	0.26	-0.1
3,608,451	+		Pf1N1B4_3223	0.31	-2.2
3,608,451	+		Pf1N1B4_3223	0.31	-2.4
3,608,451	+		Pf1N1B4_3223	0.31	-0.1
3,608,451	+		Pf1N1B4_3223	0.31	-2.0
3,608,451	+		Pf1N1B4_3223	0.31	-2.4
3,608,452	-		Pf1N1B4_3223	0.31	-0.1
3,608,481	-		Pf1N1B4_3223	0.33	-0.1