Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2783

Experiment: Nitrate reduction, replicate B t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B t2
3,127,796	+		Pf1N1B4_2782	0.71	-0.0
3,128,129	+				-1.3
3,128,129	+				-2.0
3,128,129	+				-0.0
3,128,138	+				-0.0
3,128,148	+				-2.0
3,128,148	+				-0.0
3,128,449	+		Pf1N1B4_2783	0.56	-0.0
3,128,581	+		Pf1N1B4_2783	0.83	-0.0
3,128,582	-		Pf1N1B4_2783	0.83	-3.7
3,128,582	-		Pf1N1B4_2783	0.83	-0.0
3,128,582	-		Pf1N1B4_2783	0.83	-0.0
3,128,639	+				-0.0
3,128,640	-				-0.3
3,128,682	+				-0.7
3,128,682	+				-0.0
3,128,682	+				-2.8
3,128,683	-				-0.0
3,128,683	-				-1.8
3,128,683	-				-0.0
3,128,683	-				+0.1
3,128,683	-				-0.0
3,128,710	-				-1.9
3,128,710	-				-0.0
3,128,710	-				-0.0
3,128,729	+				-0.0
3,128,738	+				-3.1
3,128,738	+				-1.1
3,128,738	+				-0.0
3,128,738	+				-0.0
3,128,822	+		Pf1N1B4_2784	0.24	-0.0
3,128,822	+		Pf1N1B4_2784	0.24	-0.0
3,128,823	-		Pf1N1B4_2784	0.24	-0.0
3,128,823	-		Pf1N1B4_2784	0.24	-0.0
3,128,892	-		Pf1N1B4_2784	0.43	-0.0
3,128,892	-		Pf1N1B4_2784	0.43	-0.0
3,128,910	-		Pf1N1B4_2784	0.48	-1.4
3,129,123	+				-3.7
3,129,134	+				-0.0
3,129,134	+				-0.0
3,129,135	-				-2.8
3,129,135	-				-2.0
3,129,155	+				-0.0
3,129,155	+				-1.3
3,129,155	+				-0.0
3,129,155	+				-0.0
3,129,155	+				-0.0
3,129,155	+				-0.0
3,129,155	+				-0.0
3,129,155	+				-2.1
3,129,155	+				-2.4
3,129,155	+				-1.6
3,129,155	+				-0.0
3,129,156	-				-0.0
3,129,156	-				-0.0
3,129,156	-				-2.5
3,129,156	-				-2.1
3,129,156	-				-0.0
3,129,156	-				-0.0
3,129,156	-				-0.0
3,129,156	-				-0.0
3,129,174	+				-2.4
3,129,175	-				-0.0
3,129,303	+				-0.0
3,129,303	+				-0.0
3,129,309	+				-2.4
3,129,310	-				-0.5
3,129,326	+				-0.0
3,129,326	+				-1.5
3,129,326	+				-0.0
3,129,327	-				-0.0
3,129,327	-				-0.0
3,129,327	-				-2.5
3,129,327	-				-0.0
3,129,327	-				-0.0
3,129,456	+				-0.0
3,129,456	+				-0.0
3,129,457	-				-0.0
3,129,457	-				-0.0
3,129,457	-				-1.7
3,129,457	-				-0.0
3,129,457	-				-0.0
3,129,457	-				-0.0
3,129,457	-				-0.0
3,129,503	+		Pf1N1B4_2785	0.11	-0.0
3,129,504	-		Pf1N1B4_2785	0.11	-0.0
3,129,559	+		Pf1N1B4_2785	0.14	-0.0
3,129,559	+		Pf1N1B4_2785	0.14	-1.4
3,129,559	+		Pf1N1B4_2785	0.14	-0.0
3,129,560	-		Pf1N1B4_2785	0.14	-0.0
3,129,560	-		Pf1N1B4_2785	0.14	-0.3
3,129,598	+		Pf1N1B4_2785	0.16	-0.0
3,129,599	-				-1.6
3,129,599	-		Pf1N1B4_2785	0.16	-1.6