Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2280

Experiment: Nitrate reduction, replicate B t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B t2
2,594,093	+				-1.7
2,594,093	+				-1.8
2,594,094	-				-0.0
2,594,109	-				-0.8
2,594,844	-				-2.6
2,594,845	+				-0.0
2,594,845	+				-0.0
2,594,845	+				-0.0
2,594,845	+				-0.0
2,594,845	+				-0.0
2,594,845	+				-0.0
2,594,846	-				-0.0
2,594,846	-				-0.0
2,594,846	-				-2.6
2,594,846	-				-2.2
2,594,846	-				-0.0
2,594,911	+				-2.3
2,594,911	+				-0.0
2,594,917	+				-0.6
2,594,918	-				-0.9
2,594,918	-				-0.0
2,594,959	+				-0.0
2,594,959	+		Pf1N1B4_2279	0.33	-1.9
2,594,959	+		Pf1N1B4_2279	0.33	-0.0
2,594,959	+		Pf1N1B4_2279	0.33	-0.0
2,594,960	-		Pf1N1B4_2279	0.34	-0.0
2,594,960	-		Pf1N1B4_2279	0.34	-0.0
2,594,960	-		Pf1N1B4_2279	0.34	-0.0
2,594,960	-		Pf1N1B4_2279	0.34	-0.0
2,594,960	-		Pf1N1B4_2279	0.34	-0.0
2,594,960	-		Pf1N1B4_2279	0.34	-3.0
2,594,960	-		Pf1N1B4_2279	0.34	-0.0
2,594,960	-		Pf1N1B4_2279	0.34	-1.6
2,594,963	+		Pf1N1B4_2279	0.36	-0.0
2,594,963	+		Pf1N1B4_2279	0.36	-0.0
2,594,963	+		Pf1N1B4_2279	0.36	-0.0
2,594,963	+		Pf1N1B4_2279	0.36	-0.0
2,594,963	+		Pf1N1B4_2279	0.36	-0.0
2,594,964	-		Pf1N1B4_2279	0.37	-0.0
2,594,964	-		Pf1N1B4_2279	0.37	-0.0
2,594,964	-		Pf1N1B4_2279	0.37	-0.0
2,594,964	-		Pf1N1B4_2279	0.37	-0.0
2,594,973	-		Pf1N1B4_2279	0.43	-4.4
2,594,973	-		Pf1N1B4_2279	0.43	-2.0
2,595,003	+		Pf1N1B4_2279	0.63	-0.0
2,595,004	-		Pf1N1B4_2279	0.64	-0.0
2,595,004	-		Pf1N1B4_2279	0.64	-0.0
2,595,090	+				-0.0
2,595,090	+				-0.0
2,595,090	+				-0.0
2,595,090	+				-0.0
2,595,090	+				-0.0
2,595,091	-				-4.6
2,595,091	-				-0.0
2,595,091	-				-3.7
2,595,091	-				-3.7
2,595,091	-				-0.0
2,595,091	-				-4.4
2,595,091	-				-2.1
2,595,121	-				-0.0
2,595,121	-				-0.0
2,595,121	-				-0.0
2,595,133	+				-5.6
2,595,186	-				-3.6
2,595,186	-				-1.8
2,595,243	+				-4.8
2,595,243	+		Pf1N1B4_2280	0.11	-4.0
2,595,244	-		Pf1N1B4_2280	0.11	-3.0
2,595,244	-		Pf1N1B4_2280	0.11	-0.0
2,595,245	+		Pf1N1B4_2280	0.11	-6.4
2,595,496	-		Pf1N1B4_2280	0.28	-0.0
2,595,501	+		Pf1N1B4_2280	0.28	-0.0
2,595,501	+		Pf1N1B4_2280	0.28	-3.3
2,595,502	-		Pf1N1B4_2280	0.28	-0.0
2,595,502	-		Pf1N1B4_2280	0.28	-0.0
2,595,502	-		Pf1N1B4_2280	0.28	-0.0
2,595,502	-		Pf1N1B4_2280	0.28	-3.5
2,595,513	+		Pf1N1B4_2280	0.29	-0.0
2,595,513	+		Pf1N1B4_2280	0.29	-1.3
2,595,651	+		Pf1N1B4_2280	0.38	-4.1
2,595,651	+		Pf1N1B4_2280	0.38	-0.0
2,595,651	+		Pf1N1B4_2280	0.38	-0.0
2,595,651	+		Pf1N1B4_2280	0.38	-0.0
2,595,652	-		Pf1N1B4_2280	0.38	-3.4
2,595,652	-		Pf1N1B4_2280	0.38	-0.0
2,595,819	+		Pf1N1B4_2280	0.49	-4.0
2,595,819	+		Pf1N1B4_2280	0.49	-4.2
2,595,819	+		Pf1N1B4_2280	0.49	-0.0
2,595,820	-		Pf1N1B4_2280	0.49	-0.0
2,595,820	-		Pf1N1B4_2280	0.49	-3.3
2,595,824	-		Pf1N1B4_2280	0.49	-0.0
2,595,876	-		Pf1N1B4_2280	0.53	-4.0
2,595,879	+		Pf1N1B4_2280	0.53	-3.9
2,595,880	-		Pf1N1B4_2280	0.53	+1.0
2,595,942	+		Pf1N1B4_2280	0.57	-0.0
2,595,942	+		Pf1N1B4_2280	0.57	-0.0
2,595,942	+		Pf1N1B4_2280	0.57	-0.0
2,595,942	+		Pf1N1B4_2280	0.57	-0.0
2,595,942	+		Pf1N1B4_2280	0.57	-5.1
2,595,942	+		Pf1N1B4_2280	0.57	-0.0
2,595,942	+		Pf1N1B4_2280	0.57	-0.0
2,595,942	+		Pf1N1B4_2280	0.57	-4.9
2,595,942	+		Pf1N1B4_2280	0.57	-3.8
2,595,942	+		Pf1N1B4_2280	0.57	-4.4
2,595,943	-		Pf1N1B4_2280	0.57	-0.0
2,595,943	-		Pf1N1B4_2280	0.57	-0.0
2,595,943	-		Pf1N1B4_2280	0.57	-0.0
2,595,943	-				-0.0
2,595,943	-		Pf1N1B4_2280	0.57	-0.0
2,596,152	+		Pf1N1B4_2280	0.71	-0.0
2,596,152	+		Pf1N1B4_2280	0.71	-3.6
2,596,159	-		Pf1N1B4_2280	0.71	-0.0
2,596,310	+		Pf1N1B4_2280	0.81	-0.0
2,596,310	+		Pf1N1B4_2280	0.81	-0.0
2,596,471	+				-0.0
2,596,471	+				-5.2
2,596,546	-				-0.0
2,596,546	-				-0.0
2,596,573	-				-4.2
2,596,573	-				-4.3
2,596,665	-				-0.0
2,596,665	-				-1.6
2,596,665	-				-0.0
2,596,760	+		Pf1N1B4_2281	0.26	-0.0
2,596,761	-		Pf1N1B4_2281	0.26	-0.0
2,596,761	-		Pf1N1B4_2281	0.26	-2.4
2,596,761	-		Pf1N1B4_2281	0.26	-2.3
2,596,761	-		Pf1N1B4_2281	0.26	-0.0
2,596,900	-		Pf1N1B4_2281	0.54	-0.0
2,596,900	-		Pf1N1B4_2281	0.54	-2.1
2,596,982	+		Pf1N1B4_2281	0.71	-0.0
2,597,121	+				-2.9
2,597,121	+				-0.0
2,597,121	+				+1.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-1.8
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-1.2
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-3.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-1.5
2,597,121	+				-2.7
2,597,121	+				-2.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-2.9
2,597,121	+				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-4.5
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-3.0
2,597,122	-				-0.0
2,597,122	-				-0.4
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-1.0
2,597,122	-				-1.1
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,125	+				-1.1
2,597,125	+				-0.0
2,597,126	-				-0.0
2,597,126	-				-2.3
2,597,126	-				-1.2
2,597,126	-				-0.0
2,597,126	-				-0.0
2,597,126	-				-0.0
2,597,126	-				-0.0
2,597,126	-				-3.2
2,597,305	+		Pf1N1B4_2282	0.19	-0.0
2,597,305	+		Pf1N1B4_2282	0.19	-3.4
2,597,305	+		Pf1N1B4_2282	0.19	-0.0
2,597,306	-		Pf1N1B4_2282	0.19	-0.0
2,597,306	-		Pf1N1B4_2282	0.19	-0.0
2,597,306	-		Pf1N1B4_2282	0.19	-4.3
2,597,306	-		Pf1N1B4_2282	0.19	-4.2
2,597,311	+		Pf1N1B4_2282	0.20	-0.0
2,597,311	+		Pf1N1B4_2282	0.20	-0.0
2,597,311	+		Pf1N1B4_2282	0.20	-0.0
2,597,311	+		Pf1N1B4_2282	0.20	-0.0
2,597,311	+		Pf1N1B4_2282	0.20	-4.7
2,597,311	+		Pf1N1B4_2282	0.20	-0.0
2,597,311	+		Pf1N1B4_2282	0.20	-3.9
2,597,311	+		Pf1N1B4_2282	0.20	-0.0
2,597,312	-		Pf1N1B4_2282	0.20	-3.7
2,597,312	-		Pf1N1B4_2282	0.20	-0.0
2,597,312	-		Pf1N1B4_2282	0.20	-0.0
2,597,312	-		Pf1N1B4_2282	0.20	-0.0
2,597,312	-		Pf1N1B4_2282	0.20	-0.0
2,597,312	-		Pf1N1B4_2282	0.20	-4.3
2,597,312	-		Pf1N1B4_2282	0.20	-6.2
2,597,312	-		Pf1N1B4_2282	0.20	-2.6
2,597,312	-		Pf1N1B4_2282	0.20	-3.0