Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_208

Experiment: Nitrate reduction, replicate B t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_207 and Pf1N1B4_208 overlap by 4 nucleotides Pf1N1B4_207 - Sensor histidine kinase, at 253,597 to 254,922 _207 Pf1N1B4_208 - Two-component system response regulator QseB, at 254,919 to 255,599 _208 Position (kb) 254 255 256Strain fitness (log2 ratio) -3 -2 -1 0 1at 254.382 kb on + strand, within Pf1N1B4_207at 254.382 kb on + strand, within Pf1N1B4_207at 255.020 kb on + strand, within Pf1N1B4_208at 255.260 kb on + strand, within Pf1N1B4_208at 255.261 kb on - strand, within Pf1N1B4_208at 255.307 kb on + strand, within Pf1N1B4_208at 255.307 kb on + strand, within Pf1N1B4_208at 255.307 kb on + strand, within Pf1N1B4_208at 255.653 kb on + strandat 255.654 kb on - strandat 255.654 kb on - strandat 255.711 kb on - strandat 255.833 kb on + strandat 255.870 kb on - strandat 255.898 kb on - strandat 256.017 kb on + strandat 256.017 kb on + strandat 256.181 kb on + strandat 256.182 kb on - strandat 256.193 kb on - strandat 256.221 kb on + strandat 256.222 kb on - strandat 256.248 kb on - strandat 256.258 kb on + strandat 256.259 kb on - strandat 256.297 kb on + strandat 256.297 kb on + strandat 256.543 kb on + strandat 256.544 kb on - strandat 256.552 kb on + strandat 256.560 kb on - strandat 256.595 kb on + strandat 256.595 kb on + strandat 256.595 kb on + strandat 256.595 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B t2
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254,382 + Pf1N1B4_207 0.59 -0.0
254,382 + Pf1N1B4_207 0.59 -0.0
255,020 + Pf1N1B4_208 0.15 -0.0
255,260 + Pf1N1B4_208 0.50 -0.0
255,261 - Pf1N1B4_208 0.50 -2.0
255,307 + Pf1N1B4_208 0.57 -0.0
255,307 + Pf1N1B4_208 0.57 -3.5
255,307 + Pf1N1B4_208 0.57 -0.0
255,653 + -1.7
255,654 - -0.0
255,654 - -0.0
255,711 - -0.0
255,833 + -0.0
255,870 - -0.0
255,898 - -0.0
256,017 + -2.1
256,017 + -2.4
256,181 + -0.0
256,182 - -0.0
256,193 - -1.1
256,221 + -2.4
256,222 - -2.2
256,248 - -0.0
256,258 + -0.0
256,259 - -0.0
256,297 + -0.0
256,297 + -1.9
256,543 + -0.0
256,544 - -0.0
256,552 + -2.3
256,560 - -0.0
256,595 + -0.0
256,595 + -0.0
256,595 + -1.0
256,595 + -1.5

Or see this region's nucleotide sequence