Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2010

Experiment: Nitrate reduction, replicate B t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B t2
2,294,458	+		Pf1N1B4_2009	0.27	-0.0
2,294,459	-		Pf1N1B4_2009	0.27	-0.0
2,294,459	-		Pf1N1B4_2009	0.27	-0.0
2,294,531	+		Pf1N1B4_2009	0.35	-0.0
2,294,532	-		Pf1N1B4_2009	0.35	-0.0
2,294,532	-		Pf1N1B4_2009	0.35	-3.6
2,294,532	-		Pf1N1B4_2009	0.35	-0.0
2,294,532	-		Pf1N1B4_2009	0.35	-0.0
2,294,585	+		Pf1N1B4_2009	0.40	-1.7
2,294,586	-		Pf1N1B4_2009	0.40	-4.2
2,294,840	+		Pf1N1B4_2009	0.67	-0.0
2,294,840	+		Pf1N1B4_2009	0.67	-0.0
2,294,840	+		Pf1N1B4_2009	0.67	-0.0
2,294,841	-		Pf1N1B4_2009	0.67	-0.0
2,294,841	-		Pf1N1B4_2009	0.67	-0.0
2,294,981	+		Pf1N1B4_2009	0.82	-0.0
2,294,982	-		Pf1N1B4_2009	0.82	-3.0
2,294,999	+		Pf1N1B4_2009	0.84	-0.0
2,294,999	+		Pf1N1B4_2009	0.84	-0.0
2,294,999	+		Pf1N1B4_2009	0.84	-0.0
2,294,999	+		Pf1N1B4_2009	0.84	-0.0
2,295,000	-		Pf1N1B4_2009	0.84	-0.0
2,295,000	-				-1.8
2,295,000	-		Pf1N1B4_2009	0.84	-5.1
2,295,000	-		Pf1N1B4_2009	0.84	-0.0
2,295,096	-				-0.0
2,295,104	-				-3.0
2,295,104	-				-0.0
2,295,104	-				-0.0
2,295,104	-				-3.2
2,295,268	-				-4.4
2,295,364	-				-0.0
2,295,453	-				-0.0
2,295,453	-				-4.5
2,295,453	-				-3.3
2,295,453	-				-0.0
2,295,738	+		Pf1N1B4_2010	0.27	-0.0
2,296,115	+		Pf1N1B4_2010	0.53	-0.0
2,296,116	-		Pf1N1B4_2010	0.53	-0.0
2,296,116	-		Pf1N1B4_2010	0.53	-0.0
2,296,116	-		Pf1N1B4_2010	0.53	-0.0
2,296,205	+		Pf1N1B4_2010	0.60	-0.0
2,296,205	+		Pf1N1B4_2010	0.60	-0.0
2,296,205	+				-0.0
2,296,205	+		Pf1N1B4_2010	0.60	-3.4
2,296,206	-		Pf1N1B4_2010	0.60	-0.0
2,296,206	-		Pf1N1B4_2010	0.60	-3.0
2,296,206	-				-0.0
2,296,262	-		Pf1N1B4_2010	0.64	-4.4
2,296,262	-		Pf1N1B4_2010	0.64	-1.3
2,296,427	+		Pf1N1B4_2010	0.75	-0.0
2,296,427	+		Pf1N1B4_2010	0.75	-0.0
2,296,469	+		Pf1N1B4_2010	0.78	-0.0
2,296,469	+		Pf1N1B4_2010	0.78	-0.0
2,296,470	-		Pf1N1B4_2010	0.78	-0.0
2,296,470	-		Pf1N1B4_2010	0.78	-0.0
2,296,470	-		Pf1N1B4_2010	0.78	-0.0
2,296,470	-		Pf1N1B4_2010	0.78	-0.0
2,296,470	-		Pf1N1B4_2010	0.78	-4.3
2,296,496	+		Pf1N1B4_2010	0.80	-2.8
2,296,496	+		Pf1N1B4_2010	0.80	-2.2
2,296,496	+		Pf1N1B4_2010	0.80	-0.0
2,296,497	-		Pf1N1B4_2010	0.80	-0.0
2,296,613	+		Pf1N1B4_2010	0.89	-0.0
2,296,614	-		Pf1N1B4_2010	0.89	-0.0
2,296,614	-		Pf1N1B4_2010	0.89	-0.0
2,296,614	-		Pf1N1B4_2010	0.89	-0.0
2,296,700	+				-0.5
2,296,700	+				-0.0
2,296,700	+				-0.0
2,296,700	+				-4.1
2,296,700	+				-0.0
2,296,700	+				-0.0
2,296,701	-				-0.0
2,296,701	-				-0.0
2,296,701	-				-0.0
2,296,779	+				-0.0
2,296,779	+				-3.5
2,296,780	-				-4.3
2,296,780	-				-0.0
2,296,780	-				-0.0
2,296,780	-				-0.0
2,296,780	-				-4.5
2,296,953	-				-0.0
2,296,953	-				-0.0
2,297,010	+				-2.4
2,297,011	-		Pf1N1B4_2011	0.12	-0.0
2,297,065	+		Pf1N1B4_2011	0.15	-0.0
2,297,157	+		Pf1N1B4_2011	0.21	-2.5
2,297,183	+		Pf1N1B4_2011	0.22	-0.0
2,297,184	-		Pf1N1B4_2011	0.22	-0.0
2,297,184	-		Pf1N1B4_2011	0.22	-3.9
2,297,221	+		Pf1N1B4_2011	0.24	-0.0
2,297,221	+		Pf1N1B4_2011	0.24	-0.0
2,297,222	-		Pf1N1B4_2011	0.24	-0.0
2,297,222	-		Pf1N1B4_2011	0.24	-3.8
2,297,593	+		Pf1N1B4_2011	0.45	-0.0
2,297,593	+		Pf1N1B4_2011	0.45	-0.0
2,297,593	+		Pf1N1B4_2011	0.45	-0.0
2,297,593	+		Pf1N1B4_2011	0.45	-0.0
2,297,594	-		Pf1N1B4_2011	0.45	-0.0
2,297,594	-		Pf1N1B4_2011	0.45	-5.0
2,297,594	-		Pf1N1B4_2011	0.45	-0.0
2,297,594	-		Pf1N1B4_2011	0.45	-0.0
2,297,599	+		Pf1N1B4_2011	0.45	-0.0
2,297,599	+		Pf1N1B4_2011	0.45	-0.0
2,297,600	-		Pf1N1B4_2011	0.45	-1.3
2,297,600	-				-0.0
2,297,600	-		Pf1N1B4_2011	0.45	-0.0
2,297,617	+		Pf1N1B4_2011	0.46	-0.0
2,297,617	+		Pf1N1B4_2011	0.46	-1.0
2,297,617	+		Pf1N1B4_2011	0.46	-3.5
2,297,617	+		Pf1N1B4_2011	0.46	-0.0
2,297,617	+		Pf1N1B4_2011	0.46	-0.0
2,297,617	+		Pf1N1B4_2011	0.46	-0.0
2,297,618	-		Pf1N1B4_2011	0.46	-4.4
2,297,618	-		Pf1N1B4_2011	0.46	-3.4