Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1962

Experiment: Nitrate reduction, replicate B t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B t2
2,241,687	+		Pf1N1B4_1961	0.38	-0.0
2,241,688	-		Pf1N1B4_1961	0.38	-0.0
2,241,822	+		Pf1N1B4_1961	0.48	-0.0
2,241,823	-		Pf1N1B4_1961	0.48	-2.8
2,241,823	-		Pf1N1B4_1961	0.48	-1.8
2,241,915	+		Pf1N1B4_1961	0.55	-0.0
2,241,916	-		Pf1N1B4_1961	0.55	-0.0
2,241,981	+		Pf1N1B4_1961	0.60	-0.0
2,241,981	+		Pf1N1B4_1961	0.60	-0.0
2,241,981	+		Pf1N1B4_1961	0.60	-2.5
2,241,981	+		Pf1N1B4_1961	0.60	-0.0
2,241,982	-		Pf1N1B4_1961	0.60	-3.1
2,242,014	+		Pf1N1B4_1961	0.62	-0.0
2,242,014	+		Pf1N1B4_1961	0.62	-0.0
2,242,014	+		Pf1N1B4_1961	0.62	-3.7
2,242,015	-		Pf1N1B4_1961	0.62	-0.0
2,242,015	-		Pf1N1B4_1961	0.62	-0.0
2,242,015	-		Pf1N1B4_1961	0.62	-0.0
2,242,015	-		Pf1N1B4_1961	0.62	-0.0
2,242,227	+		Pf1N1B4_1961	0.77	-0.0
2,242,506	+				-0.9
2,242,506	+				-2.5
2,242,506	+				-0.0
2,242,506	+				-0.0
2,242,507	-				-2.2
2,242,507	-				-2.2
2,242,507	-				-3.1
2,242,507	-				-0.0
2,242,507	-				-0.0
2,242,507	-				-0.0
2,242,523	+				-1.0
2,242,718	+		Pf1N1B4_1962	0.15	-2.0
2,242,718	+		Pf1N1B4_1962	0.15	-0.0
2,242,718	+		Pf1N1B4_1962	0.15	-3.5
2,242,718	+		Pf1N1B4_1962	0.15	-0.0
2,242,718	+		Pf1N1B4_1962	0.15	-3.4
2,242,718	+		Pf1N1B4_1962	0.15	-2.4
2,242,719	-		Pf1N1B4_1962	0.15	-0.0
2,242,719	-		Pf1N1B4_1962	0.15	-0.0
2,242,757	+		Pf1N1B4_1962	0.18	-3.4
2,242,823	+		Pf1N1B4_1962	0.24	-0.0
2,242,823	+		Pf1N1B4_1962	0.24	-0.0
2,242,823	+		Pf1N1B4_1962	0.24	-2.8
2,242,823	+		Pf1N1B4_1962	0.24	-2.9
2,242,823	+		Pf1N1B4_1962	0.24	-0.0
2,242,823	+		Pf1N1B4_1962	0.24	-0.0
2,242,823	+				-0.0
2,242,824	-		Pf1N1B4_1962	0.24	-0.0
2,242,824	-		Pf1N1B4_1962	0.24	-0.0
2,243,078	+		Pf1N1B4_1962	0.44	-0.0
2,243,078	+		Pf1N1B4_1962	0.44	-2.8
2,243,078	+		Pf1N1B4_1962	0.44	-0.0
2,243,078	+		Pf1N1B4_1962	0.44	-0.0
2,243,079	-		Pf1N1B4_1962	0.44	-0.0
2,243,079	-		Pf1N1B4_1962	0.44	-0.0
2,243,079	-		Pf1N1B4_1962	0.44	-0.0
2,243,079	-		Pf1N1B4_1962	0.44	-0.0
2,243,079	-		Pf1N1B4_1962	0.44	-3.1
2,243,079	-		Pf1N1B4_1962	0.44	-0.0
2,243,079	-		Pf1N1B4_1962	0.44	-0.0
2,243,079	-		Pf1N1B4_1962	0.44	-0.0
2,243,079	-		Pf1N1B4_1962	0.44	-0.0
2,243,081	+		Pf1N1B4_1962	0.44	-0.0
2,243,082	-		Pf1N1B4_1962	0.44	-2.0
2,243,249	+		Pf1N1B4_1962	0.58	-0.0
2,243,249	+		Pf1N1B4_1962	0.58	-5.6
2,243,249	+		Pf1N1B4_1962	0.58	-1.3
2,243,250	-		Pf1N1B4_1962	0.58	-0.0
2,243,348	+		Pf1N1B4_1962	0.66	-0.0
2,243,348	+		Pf1N1B4_1962	0.66	-0.0
2,243,348	+		Pf1N1B4_1962	0.66	-0.0
2,243,349	-		Pf1N1B4_1962	0.66	-3.8
2,243,589	+		Pf1N1B4_1962	0.85	+1.0
2,243,590	-		Pf1N1B4_1962	0.85	-3.9
2,243,590	-		Pf1N1B4_1962	0.85	-0.0
2,243,590	-		Pf1N1B4_1962	0.85	-3.0
2,243,653	+				-0.0
2,243,654	-				-0.0
2,243,654	-				-0.0
2,243,654	-				-0.0
2,243,738	+				-0.0
2,243,747	+				-0.0
2,243,747	+				-2.4
2,243,748	-				-0.0
2,243,748	-				-0.0
2,243,773	+				-0.0
2,243,773	+				-3.6
2,243,773	+				-0.0
2,243,773	+				-3.2
2,243,773	+				-0.0
2,243,773	+				-0.0
2,243,773	+				-0.0
2,243,773	+				-1.5
2,243,773	+				-0.0
2,243,773	+				-0.0
2,243,774	-				-0.0
2,243,774	-				-0.0
2,243,774	-				-3.2
2,243,774	-				-0.0
2,243,774	-				-3.3
2,243,774	-				-0.0
2,243,774	-				-0.0
2,243,774	-				-0.0
2,243,774	-				-2.8
2,243,920	+		Pf1N1B4_1963	0.17	-0.0
2,243,921	-		Pf1N1B4_1963	0.17	-0.0
2,243,921	-				-0.0
2,244,364	+		Pf1N1B4_1963	0.73	-0.0
2,244,364	+		Pf1N1B4_1963	0.73	-0.0
2,244,365	-		Pf1N1B4_1963	0.73	-0.0
2,244,365	-		Pf1N1B4_1963	0.73	-3.2
2,244,365	-		Pf1N1B4_1963	0.73	-1.9
2,244,365	-		Pf1N1B4_1963	0.73	-3.0
2,244,365	-		Pf1N1B4_1963	0.73	-2.5
2,244,373	+		Pf1N1B4_1963	0.74	-0.0
2,244,373	+		Pf1N1B4_1963	0.74	-2.4
2,244,374	-		Pf1N1B4_1963	0.74	-0.0
2,244,374	-		Pf1N1B4_1963	0.74	-0.0
2,244,374	-		Pf1N1B4_1963	0.74	-1.9
2,244,436	+		Pf1N1B4_1963	0.82	-0.0
2,244,436	+				-0.0
2,244,436	+		Pf1N1B4_1963	0.82	-0.0
2,244,437	-		Pf1N1B4_1963	0.82	-0.0
2,244,437	-		Pf1N1B4_1963	0.82	-0.0
2,244,637	+				-0.0
2,244,637	+				-0.0
2,244,637	+				-0.0
2,244,637	+				-0.0
2,244,637	+				-0.0
2,244,638	-				-0.0