Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1890

Experiment: Nitrate reduction, replicate B t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B t2
2,162,004	+		Pf1N1B4_1889	0.31	-0.6
2,162,004	+		Pf1N1B4_1889	0.31	-1.2
2,162,004	+		Pf1N1B4_1889	0.31	-0.0
2,162,004	+		Pf1N1B4_1889	0.31	-0.8
2,162,004	+		Pf1N1B4_1889	0.31	-0.0
2,162,004	+		Pf1N1B4_1889	0.31	-0.0
2,162,004	+		Pf1N1B4_1889	0.31	-0.0
2,162,004	+		Pf1N1B4_1889	0.31	-0.0
2,162,004	+		Pf1N1B4_1889	0.31	-0.0
2,162,005	-		Pf1N1B4_1889	0.31	+0.4
2,162,005	-		Pf1N1B4_1889	0.31	-0.4
2,162,005	-		Pf1N1B4_1889	0.31	-0.0
2,162,005	-		Pf1N1B4_1889	0.31	-0.0
2,162,005	-		Pf1N1B4_1889	0.31	-1.4
2,162,005	-		Pf1N1B4_1889	0.31	-0.0
2,162,005	-		Pf1N1B4_1889	0.31	-0.6
2,162,005	-		Pf1N1B4_1889	0.31	-1.5
2,162,055	+		Pf1N1B4_1889	0.35	-0.0
2,162,055	+		Pf1N1B4_1889	0.35	-0.0
2,162,055	+		Pf1N1B4_1889	0.35	-1.3
2,162,056	-		Pf1N1B4_1889	0.35	-0.0
2,162,056	-		Pf1N1B4_1889	0.35	-0.0
2,162,056	-		Pf1N1B4_1889	0.35	-1.1
2,162,056	-		Pf1N1B4_1889	0.35	-2.0
2,162,056	-		Pf1N1B4_1889	0.35	-0.0
2,162,056	-		Pf1N1B4_1889	0.35	-0.0
2,162,099	+		Pf1N1B4_1889	0.39	-2.5
2,162,099	+		Pf1N1B4_1889	0.39	-0.0
2,162,099	+		Pf1N1B4_1889	0.39	-1.4
2,162,099	+		Pf1N1B4_1889	0.39	-2.0
2,162,099	+		Pf1N1B4_1889	0.39	-1.5
2,162,100	-		Pf1N1B4_1889	0.39	-0.0
2,162,100	-		Pf1N1B4_1889	0.39	-0.0
2,162,240	+		Pf1N1B4_1889	0.50	-2.2
2,162,240	+		Pf1N1B4_1889	0.50	-0.0
2,162,241	-		Pf1N1B4_1889	0.50	-1.9
2,162,241	-		Pf1N1B4_1889	0.50	-0.0
2,162,241	-		Pf1N1B4_1889	0.50	-0.0
2,162,241	-		Pf1N1B4_1889	0.50	-2.9
2,162,385	+		Pf1N1B4_1889	0.62	-0.0
2,162,385	+		Pf1N1B4_1889	0.62	-0.0
2,162,386	-		Pf1N1B4_1889	0.62	-0.0
2,162,386	-		Pf1N1B4_1889	0.62	-0.0
2,162,402	+		Pf1N1B4_1889	0.63	-0.0
2,162,402	+		Pf1N1B4_1889	0.63	-0.7
2,162,403	-		Pf1N1B4_1889	0.63	-0.8
2,162,403	-		Pf1N1B4_1889	0.63	-0.0
2,162,462	+		Pf1N1B4_1889	0.68	-0.0
2,162,462	+		Pf1N1B4_1889	0.68	-0.0
2,162,463	-		Pf1N1B4_1889	0.68	-2.5
2,162,664	+		Pf1N1B4_1889	0.85	-1.0
2,162,665	-		Pf1N1B4_1889	0.85	-0.0
2,162,723	+		Pf1N1B4_1889	0.90	-0.0
2,162,723	+		Pf1N1B4_1889	0.90	-1.3
2,162,723	+		Pf1N1B4_1889	0.90	-0.0
2,162,723	+		Pf1N1B4_1889	0.90	-0.0
2,162,723	+		Pf1N1B4_1889	0.90	-0.0
2,162,723	+		Pf1N1B4_1889	0.90	-2.4
2,162,723	+		Pf1N1B4_1889	0.90	-1.9
2,162,723	+		Pf1N1B4_1889	0.90	-1.2
2,162,723	+		Pf1N1B4_1889	0.90	-2.0
2,162,723	+		Pf1N1B4_1889	0.90	-2.0
2,162,723	+		Pf1N1B4_1889	0.90	-0.6
2,162,723	+		Pf1N1B4_1889	0.90	-0.0
2,162,723	+		Pf1N1B4_1889	0.90	-1.7
2,162,723	+		Pf1N1B4_1889	0.90	-0.0
2,162,723	+		Pf1N1B4_1889	0.90	-0.0
2,162,723	+		Pf1N1B4_1889	0.90	-0.0
2,162,723	+		Pf1N1B4_1889	0.90	-0.0
2,162,723	+		Pf1N1B4_1889	0.90	-2.2
2,162,723	+		Pf1N1B4_1889	0.90	-0.9
2,162,723	+		Pf1N1B4_1889	0.90	-1.4
2,162,723	+		Pf1N1B4_1889	0.90	-0.0
2,162,723	+		Pf1N1B4_1889	0.90	-0.0
2,162,723	+		Pf1N1B4_1889	0.90	-0.0
2,162,723	+		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-2.2
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-1.4
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-2.3
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-1.5
2,162,724	-		Pf1N1B4_1889	0.90	-2.1
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-0.9
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-2.4
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-1.6
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-2.0
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,724	-		Pf1N1B4_1889	0.90	-1.7
2,162,724	-		Pf1N1B4_1889	0.90	-2.2
2,162,724	-		Pf1N1B4_1889	0.90	-2.8
2,162,724	-		Pf1N1B4_1889	0.90	-3.4
2,162,724	-		Pf1N1B4_1889	0.90	-0.0
2,162,727	+		Pf1N1B4_1889	0.90	-0.7
2,162,727	+		Pf1N1B4_1889	0.90	-0.0
2,162,727	+		Pf1N1B4_1889	0.90	-0.0
2,162,727	+		Pf1N1B4_1889	0.90	-0.0
2,162,728	-		Pf1N1B4_1889	0.90	-1.2
2,162,728	-				-0.0
2,162,728	-		Pf1N1B4_1889	0.90	-2.1
2,162,728	-		Pf1N1B4_1889	0.90	-0.0
2,162,728	-		Pf1N1B4_1889	0.90	-1.2
2,162,738	+				-2.1
2,162,738	+				-1.2
2,162,738	+				-0.0
2,162,738	+				-1.6
2,162,739	-				-0.7
2,162,739	-				-1.4
2,162,739	-				-2.1
2,162,739	-				-0.0
2,162,739	-				-0.0
2,162,739	-				-1.1
2,162,739	-				-0.0
2,162,739	-				-0.0
2,162,739	-				-1.5
2,162,739	-				-0.0
2,162,834	+				-0.0
2,162,918	+				-1.3
2,162,953	+				-0.0
2,162,953	+				-0.0
2,162,953	+				-0.0
2,162,953	+				-0.0
2,162,953	+				-0.0
2,162,953	+				-0.0
2,162,953	+				-0.0
2,162,953	+				-0.0
2,162,953	+				-2.0
2,162,953	+				-0.0
2,162,953	+				-0.0
2,162,953	+				-0.0
2,162,953	+				-1.9
2,162,953	+				-1.7
2,162,953	+				-0.0
2,162,953	+				-2.6
2,162,953	+				-0.0
2,162,954	-				-2.6
2,162,954	-				-1.2
2,162,954	-				-1.9
2,162,972	+				-0.0
2,162,973	-				-1.5
2,162,973	-				-0.0
2,162,973	-				-0.0
2,163,201	-		Pf1N1B4_1890	0.37	-3.5
2,163,255	+		Pf1N1B4_1890	0.45	-0.0
2,163,255	+		Pf1N1B4_1890	0.45	-0.0
2,163,255	+		Pf1N1B4_1890	0.45	-0.0
2,163,256	-		Pf1N1B4_1890	0.45	-0.0
2,163,256	-		Pf1N1B4_1890	0.45	-2.7
2,163,256	-		Pf1N1B4_1890	0.45	-0.0
2,163,362	+		Pf1N1B4_1890	0.62	-0.0
2,163,362	+		Pf1N1B4_1890	0.62	-0.0
2,163,363	-		Pf1N1B4_1890	0.63	-0.0
2,163,363	-		Pf1N1B4_1890	0.63	-0.0
2,163,363	-		Pf1N1B4_1890	0.63	-2.8
2,163,509	+		Pf1N1B4_1890	0.86	-0.0
2,163,510	-		Pf1N1B4_1890	0.86	-0.0
2,163,634	+				-0.0
2,163,791	+		Pf1N1B4_1891	0.21	-2.5
2,163,792	-		Pf1N1B4_1891	0.21	-2.3
2,164,357	+		Pf1N1B4_1891	0.81	-0.0
2,164,358	-		Pf1N1B4_1891	0.81	-0.0
2,164,358	-		Pf1N1B4_1891	0.81	-0.0
2,164,485	+				-2.0
2,164,486	-				-0.0
2,164,486	-				-0.0
2,164,509	+				-1.1
2,164,509	+				-0.0
2,164,509	+				-0.0
2,164,509	+				-2.3
2,164,510	-				-1.0
2,164,510	-				-0.0
2,164,510	-				-0.0
2,164,510	-				-2.8
2,164,595	+				-0.0
2,164,595	+				-2.0
2,164,595	+				-0.0
2,164,595	+				-0.0
2,164,595	+				-2.3
2,164,595	+				-0.0
2,164,595	+				-1.2
2,164,596	-				-0.0
2,164,596	-				-1.9
2,164,596	-				-2.1