Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1821

Experiment: Nitrate reduction, replicate B t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B t2
2,098,255	+		Pf1N1B4_1820	0.49	-2.3
2,098,255	+		Pf1N1B4_1820	0.49	-0.0
2,098,255	+		Pf1N1B4_1820	0.49	-0.0
2,098,255	+		Pf1N1B4_1820	0.49	-2.2
2,098,354	+		Pf1N1B4_1820	0.56	-0.0
2,098,354	+		Pf1N1B4_1820	0.56	-0.0
2,098,354	+		Pf1N1B4_1820	0.56	-0.0
2,098,354	+		Pf1N1B4_1820	0.56	-2.4
2,098,354	+		Pf1N1B4_1820	0.56	-1.9
2,098,354	+		Pf1N1B4_1820	0.56	-0.0
2,098,354	+		Pf1N1B4_1820	0.56	-0.0
2,098,354	+		Pf1N1B4_1820	0.56	-2.2
2,098,355	-		Pf1N1B4_1820	0.56	-0.0
2,098,355	-		Pf1N1B4_1820	0.56	-0.0
2,098,355	-		Pf1N1B4_1820	0.56	-0.0
2,098,355	-		Pf1N1B4_1820	0.56	-0.0
2,098,355	-		Pf1N1B4_1820	0.56	-0.0
2,098,355	-		Pf1N1B4_1820	0.56	-0.0
2,098,359	+		Pf1N1B4_1820	0.57	-0.0
2,098,359	+		Pf1N1B4_1820	0.57	-0.0
2,098,359	+		Pf1N1B4_1820	0.57	-0.0
2,098,359	+		Pf1N1B4_1820	0.57	-0.0
2,098,359	+		Pf1N1B4_1820	0.57	-1.5
2,098,359	+		Pf1N1B4_1820	0.57	-0.0
2,098,359	+		Pf1N1B4_1820	0.57	-2.1
2,098,359	+		Pf1N1B4_1820	0.57	-2.8
2,098,359	+		Pf1N1B4_1820	0.57	-0.0
2,098,359	+		Pf1N1B4_1820	0.57	-0.0
2,098,360	-		Pf1N1B4_1820	0.57	-2.4
2,098,360	-		Pf1N1B4_1820	0.57	-0.0
2,098,360	-		Pf1N1B4_1820	0.57	-2.1
2,098,360	-		Pf1N1B4_1820	0.57	+1.0
2,098,360	-		Pf1N1B4_1820	0.57	-0.0
2,098,360	-		Pf1N1B4_1820	0.57	-0.0
2,098,360	-		Pf1N1B4_1820	0.57	-0.0
2,098,488	+		Pf1N1B4_1820	0.65	-0.0
2,098,615	+		Pf1N1B4_1820	0.74	-0.0
2,098,615	+		Pf1N1B4_1820	0.74	-0.0
2,098,615	+		Pf1N1B4_1820	0.74	-2.1
2,098,615	+		Pf1N1B4_1820	0.74	-0.0
2,098,615	+				-0.0
2,098,615	+		Pf1N1B4_1820	0.74	-0.0
2,098,616	-				-0.0
2,098,616	-		Pf1N1B4_1820	0.74	-1.9
2,098,661	+		Pf1N1B4_1820	0.78	-0.0
2,098,661	+		Pf1N1B4_1820	0.78	-0.0
2,098,661	+		Pf1N1B4_1820	0.78	-1.3
2,098,661	+		Pf1N1B4_1820	0.78	-1.3
2,098,661	+		Pf1N1B4_1820	0.78	-2.1
2,098,661	+		Pf1N1B4_1820	0.78	-2.1
2,098,661	+		Pf1N1B4_1820	0.78	-0.0
2,098,661	+		Pf1N1B4_1820	0.78	-0.0
2,098,662	-		Pf1N1B4_1820	0.78	-0.0
2,098,662	-		Pf1N1B4_1820	0.78	-2.3
2,098,662	-		Pf1N1B4_1820	0.78	-0.0
2,098,662	-		Pf1N1B4_1820	0.78	-0.0
2,098,662	-		Pf1N1B4_1820	0.78	-2.4
2,098,662	-		Pf1N1B4_1820	0.78	+0.1
2,098,662	-		Pf1N1B4_1820	0.78	-0.0
2,098,662	-		Pf1N1B4_1820	0.78	-0.0
2,098,662	-		Pf1N1B4_1820	0.78	-1.5
2,098,662	-		Pf1N1B4_1820	0.78	-0.0
2,098,662	-		Pf1N1B4_1820	0.78	-0.0
2,098,664	+		Pf1N1B4_1820	0.78	-0.0
2,098,665	-		Pf1N1B4_1820	0.78	-1.4
2,098,665	-		Pf1N1B4_1820	0.78	-1.9
2,098,665	-		Pf1N1B4_1820	0.78	-0.0
2,098,687	+		Pf1N1B4_1820	0.79	-0.0
2,098,909	+				-0.0
2,098,909	+				-0.0
2,098,910	-				-0.0
2,098,910	-				-0.0
2,098,982	-				-1.0
2,098,982	-				-1.6
2,099,041	+				-1.9
2,099,042	-				-0.0
2,099,082	-				-1.0
2,099,133	+				-0.0
2,099,134	-				+0.4
2,099,134	-				-4.1
2,099,169	+				-0.0
2,099,169	+				-1.2
2,099,169	+				-0.0
2,099,169	+				-0.0
2,099,169	+				-0.0
2,099,169	+				-1.8
2,099,169	+				-0.0
2,099,169	+				-0.0
2,099,169	+				-0.9
2,099,170	-				-0.0
2,099,173	+				-4.7
2,099,173	+				-0.0
2,099,173	+				-3.2
2,099,173	+				-0.0
2,099,173	+				-0.0
2,099,173	+				-0.0
2,099,174	-				-0.0
2,099,174	-				-0.0
2,099,174	-				-1.4
2,099,174	-				-2.3
2,099,174	-				-1.0
2,099,174	-				-2.0
2,099,174	-				-1.6
2,099,174	-				-0.0
2,099,174	-				-0.0
2,099,174	-				-0.0
2,099,174	-				-0.0
2,099,174	-				-0.0
2,099,177	+				-0.0
2,099,177	+				-0.9
2,099,177	+				-0.0
2,099,177	+				-0.0
2,099,178	-				-0.0
2,099,178	-				-1.7
2,099,178	-				-0.0
2,099,178	-				-0.0
2,099,189	-				-0.0
2,099,416	-		Pf1N1B4_1821	0.16	-2.4
2,099,514	+		Pf1N1B4_1821	0.23	-0.0
2,099,515	-		Pf1N1B4_1821	0.23	-0.0
2,099,515	-		Pf1N1B4_1821	0.23	-0.0
2,099,520	+		Pf1N1B4_1821	0.23	-0.0
2,099,520	+		Pf1N1B4_1821	0.23	-1.1
2,099,520	+		Pf1N1B4_1821	0.23	-0.0
2,099,520	+		Pf1N1B4_1821	0.23	-1.6
2,099,520	+		Pf1N1B4_1821	0.23	-0.0
2,099,520	+		Pf1N1B4_1821	0.23	-2.7
2,099,521	-		Pf1N1B4_1821	0.23	-0.0
2,099,521	-		Pf1N1B4_1821	0.23	-0.0
2,099,521	-		Pf1N1B4_1821	0.23	+0.3
2,099,521	-		Pf1N1B4_1821	0.23	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-1.0
2,099,708	+		Pf1N1B4_1821	0.36	-1.8
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+				-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-2.8
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-1.9
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.9
2,099,708	+		Pf1N1B4_1821	0.36	-1.8
2,099,708	+		Pf1N1B4_1821	0.36	-2.7
2,099,708	+		Pf1N1B4_1821	0.36	-3.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-1.7
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-1.2
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-2.9
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,708	+		Pf1N1B4_1821	0.36	-2.0
2,099,708	+		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	+1.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-1.7
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-1.9
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-1.1
2,099,709	-		Pf1N1B4_1821	0.36	-2.3
2,099,709	-				-1.4
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-5.1
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-2.5
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-1.5
2,099,709	-		Pf1N1B4_1821	0.36	-0.0
2,099,709	-		Pf1N1B4_1821	0.36	-2.1
2,099,710	+		Pf1N1B4_1821	0.36	-0.0
2,099,711	-		Pf1N1B4_1821	0.36	-0.0
2,099,821	+		Pf1N1B4_1821	0.43	-0.0
2,099,822	-		Pf1N1B4_1821	0.43	-1.5
2,099,822	-		Pf1N1B4_1821	0.43	-1.8
2,100,029	+				-2.3
2,100,029	+		Pf1N1B4_1821	0.57	-0.0
2,100,030	-		Pf1N1B4_1821	0.57	-1.4
2,100,030	-		Pf1N1B4_1821	0.57	-0.0
2,100,030	-		Pf1N1B4_1821	0.57	-2.3
2,100,030	-		Pf1N1B4_1821	0.57	-0.0
2,100,030	-		Pf1N1B4_1821	0.57	-2.0
2,100,155	+		Pf1N1B4_1821	0.66	-0.0
2,100,155	+		Pf1N1B4_1821	0.66	-0.0
2,100,155	+		Pf1N1B4_1821	0.66	-1.0
2,100,155	+		Pf1N1B4_1821	0.66	-2.1
2,100,155	+		Pf1N1B4_1821	0.66	-0.0
2,100,155	+		Pf1N1B4_1821	0.66	-2.2
2,100,155	+		Pf1N1B4_1821	0.66	-0.0
2,100,155	+		Pf1N1B4_1821	0.66	-0.0
2,100,155	+		Pf1N1B4_1821	0.66	-0.0
2,100,155	+		Pf1N1B4_1821	0.66	-0.0
2,100,156	-		Pf1N1B4_1821	0.66	-2.4
2,100,156	-		Pf1N1B4_1821	0.66	-0.0
2,100,156	-		Pf1N1B4_1821	0.66	-0.0
2,100,156	-				-2.4
2,100,156	-		Pf1N1B4_1821	0.66	-0.0
2,100,156	-		Pf1N1B4_1821	0.66	-0.0
2,100,156	-		Pf1N1B4_1821	0.66	-1.4
2,100,156	-		Pf1N1B4_1821	0.66	-0.0
2,100,156	-		Pf1N1B4_1821	0.66	-1.4
2,100,156	-		Pf1N1B4_1821	0.66	-0.0
2,100,156	-		Pf1N1B4_1821	0.66	-3.6
2,100,156	-		Pf1N1B4_1821	0.66	-1.5
2,100,156	-		Pf1N1B4_1821	0.66	-0.0
2,100,156	-		Pf1N1B4_1821	0.66	-0.0
2,100,156	-		Pf1N1B4_1821	0.66	-0.0
2,100,156	-		Pf1N1B4_1821	0.66	-0.0
2,100,156	-		Pf1N1B4_1821	0.66	-0.0
2,100,157	+		Pf1N1B4_1821	0.66	-0.0
2,100,157	+		Pf1N1B4_1821	0.66	-1.5
2,100,157	+		Pf1N1B4_1821	0.66	-0.0
2,100,157	+		Pf1N1B4_1821	0.66	-1.5
2,100,158	-		Pf1N1B4_1821	0.66	-0.0
2,100,158	-		Pf1N1B4_1821	0.66	-0.5
2,100,261	-		Pf1N1B4_1821	0.73	-0.0
2,100,462	+		Pf1N1B4_1821	0.86	-0.0
2,100,462	+		Pf1N1B4_1821	0.86	-2.3
2,100,462	+		Pf1N1B4_1821	0.86	-0.0
2,100,462	+		Pf1N1B4_1821	0.86	-0.0
2,100,462	+		Pf1N1B4_1821	0.86	-0.0
2,100,462	+		Pf1N1B4_1821	0.86	-2.0
2,100,462	+		Pf1N1B4_1821	0.86	-1.3
2,100,462	+		Pf1N1B4_1821	0.86	-0.0
2,100,462	+		Pf1N1B4_1821	0.86	-3.5
2,100,462	+		Pf1N1B4_1821	0.86	-1.2
2,100,463	-		Pf1N1B4_1821	0.86	-0.0
2,100,463	-		Pf1N1B4_1821	0.86	-0.0
2,100,463	-		Pf1N1B4_1821	0.86	-0.0
2,100,560	+				-0.0
2,100,560	+				-0.0
2,100,560	+				-0.0
2,100,560	+				-0.0
2,100,561	-				-0.0
2,100,561	-				-1.0
2,100,561	-				-0.0
2,100,561	-				-0.0
2,100,561	-				-2.0
2,100,561	-				-0.0
2,100,561	-				-0.0
2,100,630	+				-0.0
2,100,630	+				+0.6
2,100,630	+				-0.0
2,100,630	+				-0.0
2,100,630	+				-0.0
2,100,630	+				-5.4
2,100,630	+				-0.0
2,100,630	+				-0.0
2,100,630	+				-0.0
2,100,630	+				-0.0
2,100,631	-				-1.5
2,100,631	-				-0.0
2,100,631	-				-0.0
2,100,631	-				-0.0
2,100,665	+				-0.0
2,100,665	+				-0.0
2,100,665	+				-1.0
2,100,666	-				-0.0
2,100,666	-				-2.2
2,100,666	-				-1.6
2,100,666	-				-0.6
2,100,666	-				-0.0
2,100,672	+				-0.0
2,100,673	-				-0.0
2,100,719	-				-0.0
2,100,770	+				-0.0
2,100,770	+				-2.1
2,100,770	+				-0.0
2,100,770	+				-0.0
2,100,771	-				-0.0
2,100,771	-				-3.3
2,100,828	+				-1.7
2,100,872	-				-2.1
2,100,952	+				-0.0
2,100,956	+				-0.0
2,100,967	+				-0.0
2,100,995	+				-0.0
2,100,995	+				-0.0
2,100,995	+				-0.0
2,100,995	+				-0.0
2,100,996	-				-0.0
2,101,025	+		Pf1N1B4_1822	0.18	-0.0
2,101,026	-		Pf1N1B4_1822	0.18	-0.0
2,101,200	+				-1.0
2,101,333	+				-0.0
2,101,333	+				-0.0
2,101,334	-				-0.0
2,101,334	-				-2.6
2,101,334	-				-0.0
2,101,334	-				-0.0
2,101,334	-				-0.0
2,101,339	+				-0.0
2,101,344	-				-2.0
2,101,344	-				-0.0
2,101,354	+				-0.0
2,101,356	+				-0.0
2,101,356	+				-0.0
2,101,357	-				-0.0
2,101,357	-				-0.0
2,101,358	+				-0.0
2,101,358	+				-0.0
2,101,359	-				-0.0
2,101,362	+				-0.0
2,101,362	+				-0.0
2,101,363	-				-0.0
2,101,363	-				-0.0
2,101,363	-				+0.1
2,101,468	+				-0.0
2,101,468	+				-0.0
2,101,469	-				-0.0
2,101,469	-				-0.9
2,101,469	-				-0.0
2,101,473	+				-0.0
2,101,473	+				-2.7
2,101,473	+				-0.0
2,101,474	-				-0.0
2,101,474	-				-0.0
2,101,474	-				-2.5
2,101,474	-				-2.3
2,101,474	-				-1.3
2,101,474	-				-0.0
2,101,476	+				-0.0
2,101,476	+				-0.0
2,101,476	+				-0.0
2,101,476	+				-0.0
2,101,477	-				-0.0
2,101,533	+				-0.0
2,101,534	-				-1.6
2,101,534	-				-0.0