Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09380 and PGA1_c09390 are separated by 112 nucleotides PGA1_c09390 and PGA1_c09400 are separated by 156 nucleotides PGA1_c09400 and PGA1_c09410 are separated by 235 nucleotides PGA1_c09410 and PGA1_c09420 are separated by 115 nucleotides
PGA1_c09380: PGA1_c09380 - putative type 2 restriction enzyme naeI, at 956,639 to 957,550
_c09380
PGA1_c09390: PGA1_c09390 - modification methylase NaeI, at 957,663 to 958,637
_c09390
PGA1_c09400: PGA1_c09400 - tRNA-Gly, at 958,794 to 958,868
_c09400
PGA1_c09410: PGA1_c09410 - hypothetical protein, at 959,104 to 959,310
_c09410
PGA1_c09420: PGA1_c09420 - pyruvate carboxylase Pyc, at 959,426 to 962,992
_c09420
Position (kb) 957
958
959 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 956.701 kb on + strand at 956.763 kb on - strand, within PGA1_c09380 at 956.763 kb on - strand, within PGA1_c09380 at 956.768 kb on + strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.824 kb on + strand, within PGA1_c09380 at 956.891 kb on - strand, within PGA1_c09380 at 956.918 kb on + strand, within PGA1_c09380 at 956.926 kb on - strand, within PGA1_c09380 at 956.926 kb on - strand, within PGA1_c09380 at 956.928 kb on + strand, within PGA1_c09380 at 956.931 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.971 kb on - strand, within PGA1_c09380 at 957.021 kb on + strand, within PGA1_c09380 at 957.021 kb on + strand, within PGA1_c09380 at 957.029 kb on - strand, within PGA1_c09380 at 957.061 kb on - strand, within PGA1_c09380 at 957.098 kb on - strand, within PGA1_c09380 at 957.103 kb on - strand, within PGA1_c09380 at 957.105 kb on + strand, within PGA1_c09380 at 957.171 kb on - strand, within PGA1_c09380 at 957.180 kb on + strand, within PGA1_c09380 at 957.255 kb on - strand, within PGA1_c09380 at 957.307 kb on + strand, within PGA1_c09380 at 957.358 kb on - strand, within PGA1_c09380 at 957.380 kb on - strand, within PGA1_c09380 at 957.445 kb on - strand, within PGA1_c09380 at 957.451 kb on + strand, within PGA1_c09380 at 957.468 kb on + strand at 957.496 kb on - strand at 957.516 kb on + strand at 957.516 kb on + strand at 957.519 kb on - strand at 957.614 kb on - strand at 957.614 kb on - strand at 957.620 kb on - strand at 957.661 kb on - strand at 957.669 kb on - strand at 958.716 kb on + strand at 958.716 kb on + strand at 958.716 kb on + strand at 958.724 kb on - strand at 958.906 kb on - strand at 959.112 kb on + strand at 959.120 kb on - strand at 959.120 kb on - strand at 959.120 kb on - strand at 959.120 kb on - strand at 959.168 kb on - strand, within PGA1_c09410 at 959.168 kb on - strand, within PGA1_c09410 at 959.213 kb on + strand, within PGA1_c09410 at 959.294 kb on + strand at 959.304 kb on + strand at 959.304 kb on + strand at 959.312 kb on - strand at 959.312 kb on - strand at 959.402 kb on + strand at 959.429 kb on + strand at 959.487 kb on + strand at 959.487 kb on + strand at 959.487 kb on + strand at 959.495 kb on - strand at 959.495 kb on - strand at 959.495 kb on - strand at 959.600 kb on + strand at 959.607 kb on + strand at 959.610 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 956,701 + +1.6 956,763 - PGA1_c09380 0.14 -0.2 956,763 - PGA1_c09380 0.14 +1.1 956,768 + PGA1_c09380 0.14 -0.2 956,776 - PGA1_c09380 0.15 -0.9 956,776 - PGA1_c09380 0.15 +0.9 956,776 - PGA1_c09380 0.15 +0.4 956,824 + PGA1_c09380 0.20 +0.4 956,891 - PGA1_c09380 0.28 -1.7 956,918 + PGA1_c09380 0.31 +1.0 956,926 - PGA1_c09380 0.31 -0.2 956,926 - PGA1_c09380 0.31 +0.1 956,928 + PGA1_c09380 0.32 -0.4 956,931 - PGA1_c09380 0.32 +0.5 956,936 - PGA1_c09380 0.33 -0.3 956,936 - PGA1_c09380 0.33 +0.0 956,936 - PGA1_c09380 0.33 +0.5 956,971 - PGA1_c09380 0.36 +0.3 957,021 + PGA1_c09380 0.42 -0.6 957,021 + PGA1_c09380 0.42 -0.2 957,029 - PGA1_c09380 0.43 -1.2 957,061 - PGA1_c09380 0.46 +0.4 957,098 - PGA1_c09380 0.50 -0.4 957,103 - PGA1_c09380 0.51 +0.4 957,105 + PGA1_c09380 0.51 +0.0 957,171 - PGA1_c09380 0.58 -0.3 957,180 + PGA1_c09380 0.59 +0.7 957,255 - PGA1_c09380 0.68 +0.1 957,307 + PGA1_c09380 0.73 +0.1 957,358 - PGA1_c09380 0.79 -0.4 957,380 - PGA1_c09380 0.81 -0.1 957,445 - PGA1_c09380 0.88 -0.6 957,451 + PGA1_c09380 0.89 -0.2 957,468 + -1.4 957,496 - -0.3 957,516 + -0.9 957,516 + -0.8 957,519 - +0.4 957,614 - +0.0 957,614 - -0.5 957,620 - -1.0 957,661 - -0.7 957,669 - -0.2 958,716 + +0.4 958,716 + -0.4 958,716 + +0.3 958,724 - +0.6 958,906 - +0.3 959,112 + +0.2 959,120 - -0.4 959,120 - -0.8 959,120 - -1.6 959,120 - +1.1 959,168 - PGA1_c09410 0.31 +0.3 959,168 - PGA1_c09410 0.31 +0.7 959,213 + PGA1_c09410 0.53 -0.8 959,294 + +0.4 959,304 + +1.0 959,304 + +0.3 959,312 - +0.4 959,312 - -0.9 959,402 + -0.6 959,429 + -3.1 959,487 + -2.6 959,487 + -2.1 959,487 + -3.7 959,495 - -1.9 959,495 - -3.6 959,495 - -2.2 959,600 + -4.2 959,607 + -2.6 959,610 + -5.2
Or see this region's nucleotide sequence