Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05220 and PGA1_c05230 are separated by 111 nucleotides PGA1_c05230 and PGA1_c05240 are separated by 327 nucleotides
PGA1_c05220: PGA1_c05220 - putative sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 515,556 to 516,674
_c05220
PGA1_c05230: PGA1_c05230 - ABC transporter, extracellular solute-binding protein, at 516,786 to 518,519
_c05230
PGA1_c05240: PGA1_c05240 - Predicted N6-adenine-specific DNA methylase, at 518,847 to 519,977
_c05240
Position (kb) 516
517
518
519 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 515.800 kb on + strand, within PGA1_c05220 at 515.862 kb on + strand, within PGA1_c05220 at 515.870 kb on - strand, within PGA1_c05220 at 515.882 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.895 kb on - strand, within PGA1_c05220 at 515.895 kb on - strand, within PGA1_c05220 at 515.948 kb on + strand, within PGA1_c05220 at 515.953 kb on + strand, within PGA1_c05220 at 515.956 kb on - strand, within PGA1_c05220 at 516.004 kb on + strand, within PGA1_c05220 at 516.010 kb on + strand, within PGA1_c05220 at 516.018 kb on - strand, within PGA1_c05220 at 516.039 kb on - strand, within PGA1_c05220 at 516.077 kb on + strand, within PGA1_c05220 at 516.204 kb on - strand, within PGA1_c05220 at 516.209 kb on - strand, within PGA1_c05220 at 516.209 kb on - strand, within PGA1_c05220 at 516.219 kb on + strand, within PGA1_c05220 at 516.219 kb on + strand, within PGA1_c05220 at 516.257 kb on + strand, within PGA1_c05220 at 516.372 kb on - strand, within PGA1_c05220 at 516.431 kb on + strand, within PGA1_c05220 at 516.441 kb on - strand, within PGA1_c05220 at 516.587 kb on + strand at 516.592 kb on + strand at 516.711 kb on - strand at 516.751 kb on + strand at 516.768 kb on + strand at 516.783 kb on + strand at 516.783 kb on - strand at 516.791 kb on - strand at 516.815 kb on + strand at 516.829 kb on + strand at 516.837 kb on - strand at 516.945 kb on - strand at 516.958 kb on - strand at 516.962 kb on + strand, within PGA1_c05230 at 516.969 kb on + strand, within PGA1_c05230 at 516.970 kb on - strand, within PGA1_c05230 at 517.002 kb on + strand, within PGA1_c05230 at 517.002 kb on + strand, within PGA1_c05230 at 517.033 kb on + strand, within PGA1_c05230 at 517.041 kb on - strand, within PGA1_c05230 at 517.060 kb on - strand, within PGA1_c05230 at 517.070 kb on - strand, within PGA1_c05230 at 517.073 kb on + strand, within PGA1_c05230 at 517.073 kb on + strand, within PGA1_c05230 at 517.073 kb on + strand, within PGA1_c05230 at 517.091 kb on + strand, within PGA1_c05230 at 517.110 kb on - strand, within PGA1_c05230 at 517.173 kb on + strand, within PGA1_c05230 at 517.180 kb on - strand, within PGA1_c05230 at 517.198 kb on - strand, within PGA1_c05230 at 517.212 kb on + strand, within PGA1_c05230 at 517.212 kb on + strand, within PGA1_c05230 at 517.220 kb on - strand, within PGA1_c05230 at 517.246 kb on + strand, within PGA1_c05230 at 517.246 kb on + strand, within PGA1_c05230 at 517.246 kb on + strand, within PGA1_c05230 at 517.246 kb on + strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.256 kb on - strand, within PGA1_c05230 at 517.318 kb on + strand, within PGA1_c05230 at 517.365 kb on + strand, within PGA1_c05230 at 517.378 kb on - strand, within PGA1_c05230 at 517.503 kb on - strand, within PGA1_c05230 at 517.505 kb on + strand, within PGA1_c05230 at 517.505 kb on + strand, within PGA1_c05230 at 517.513 kb on - strand, within PGA1_c05230 at 517.590 kb on - strand, within PGA1_c05230 at 517.761 kb on - strand, within PGA1_c05230 at 517.769 kb on + strand, within PGA1_c05230 at 517.826 kb on + strand, within PGA1_c05230 at 517.857 kb on + strand, within PGA1_c05230 at 517.878 kb on + strand, within PGA1_c05230 at 517.878 kb on - strand, within PGA1_c05230 at 517.886 kb on + strand, within PGA1_c05230 at 517.900 kb on - strand, within PGA1_c05230 at 517.931 kb on - strand, within PGA1_c05230 at 517.931 kb on - strand, within PGA1_c05230 at 517.960 kb on + strand, within PGA1_c05230 at 517.960 kb on + strand, within PGA1_c05230 at 517.968 kb on - strand, within PGA1_c05230 at 518.017 kb on + strand, within PGA1_c05230 at 518.017 kb on + strand, within PGA1_c05230 at 518.017 kb on + strand, within PGA1_c05230 at 518.017 kb on + strand, within PGA1_c05230 at 518.017 kb on + strand, within PGA1_c05230 at 518.025 kb on - strand, within PGA1_c05230 at 518.025 kb on - strand, within PGA1_c05230 at 518.025 kb on - strand, within PGA1_c05230 at 518.025 kb on - strand, within PGA1_c05230 at 518.025 kb on - strand, within PGA1_c05230 at 518.025 kb on - strand, within PGA1_c05230 at 518.025 kb on - strand, within PGA1_c05230 at 518.032 kb on + strand, within PGA1_c05230 at 518.040 kb on - strand, within PGA1_c05230 at 518.072 kb on - strand, within PGA1_c05230 at 518.097 kb on + strand, within PGA1_c05230 at 518.131 kb on + strand, within PGA1_c05230 at 518.139 kb on - strand, within PGA1_c05230 at 518.149 kb on - strand, within PGA1_c05230 at 518.149 kb on - strand, within PGA1_c05230 at 518.186 kb on + strand, within PGA1_c05230 at 518.193 kb on + strand, within PGA1_c05230 at 518.193 kb on + strand, within PGA1_c05230 at 518.193 kb on + strand, within PGA1_c05230 at 518.201 kb on - strand, within PGA1_c05230 at 518.201 kb on - strand, within PGA1_c05230 at 518.201 kb on - strand, within PGA1_c05230 at 518.201 kb on - strand, within PGA1_c05230 at 518.201 kb on - strand, within PGA1_c05230 at 518.211 kb on - strand, within PGA1_c05230 at 518.211 kb on - strand, within PGA1_c05230 at 518.211 kb on - strand, within PGA1_c05230 at 518.229 kb on + strand, within PGA1_c05230 at 518.243 kb on + strand, within PGA1_c05230 at 518.274 kb on + strand, within PGA1_c05230 at 518.274 kb on + strand, within PGA1_c05230 at 518.274 kb on + strand, within PGA1_c05230 at 518.311 kb on + strand, within PGA1_c05230 at 518.311 kb on + strand, within PGA1_c05230 at 518.311 kb on + strand, within PGA1_c05230 at 518.338 kb on + strand, within PGA1_c05230 at 518.338 kb on + strand, within PGA1_c05230 at 518.338 kb on + strand, within PGA1_c05230 at 518.338 kb on + strand, within PGA1_c05230 at 518.338 kb on + strand, within PGA1_c05230 at 518.346 kb on - strand at 518.346 kb on - strand at 518.346 kb on - strand at 518.346 kb on - strand at 518.346 kb on - strand at 518.346 kb on - strand at 518.348 kb on + strand at 518.355 kb on - strand at 518.356 kb on - strand at 518.356 kb on - strand at 518.397 kb on + strand at 518.397 kb on + strand at 518.397 kb on + strand at 518.400 kb on - strand at 518.454 kb on + strand at 518.458 kb on - strand at 518.462 kb on - strand at 518.512 kb on - strand at 518.536 kb on + strand at 518.536 kb on + strand at 518.544 kb on - strand at 518.583 kb on + strand at 518.591 kb on - strand at 518.680 kb on - strand at 518.693 kb on + strand at 518.694 kb on - strand at 518.701 kb on - strand at 518.731 kb on + strand at 518.803 kb on + strand at 518.838 kb on + strand at 518.898 kb on + strand at 518.967 kb on + strand, within PGA1_c05240 at 518.976 kb on - strand, within PGA1_c05240 at 519.024 kb on + strand, within PGA1_c05240 at 519.041 kb on + strand, within PGA1_c05240 at 519.058 kb on + strand, within PGA1_c05240 at 519.058 kb on + strand, within PGA1_c05240 at 519.066 kb on - strand, within PGA1_c05240 at 519.113 kb on + strand, within PGA1_c05240 at 519.113 kb on + strand, within PGA1_c05240 at 519.118 kb on + strand, within PGA1_c05240 at 519.134 kb on - strand, within PGA1_c05240 at 519.206 kb on + strand, within PGA1_c05240 at 519.206 kb on + strand, within PGA1_c05240 at 519.214 kb on - strand, within PGA1_c05240 at 519.214 kb on - strand, within PGA1_c05240 at 519.233 kb on + strand, within PGA1_c05240 at 519.256 kb on + strand, within PGA1_c05240 at 519.264 kb on - strand, within PGA1_c05240 at 519.264 kb on - strand, within PGA1_c05240 at 519.264 kb on - strand, within PGA1_c05240 at 519.264 kb on - strand, within PGA1_c05240 at 519.273 kb on + strand, within PGA1_c05240 at 519.306 kb on - strand, within PGA1_c05240 at 519.328 kb on - strand, within PGA1_c05240 at 519.342 kb on + strand, within PGA1_c05240 at 519.347 kb on + strand, within PGA1_c05240 at 519.434 kb on - strand, within PGA1_c05240 at 519.455 kb on + strand, within PGA1_c05240
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 515,800 + PGA1_c05220 0.22 +0.0 515,862 + PGA1_c05220 0.27 +0.3 515,870 - PGA1_c05220 0.28 +1.5 515,882 + PGA1_c05220 0.29 +0.8 515,887 + PGA1_c05220 0.30 +0.8 515,887 + PGA1_c05220 0.30 -0.5 515,887 + PGA1_c05220 0.30 +1.2 515,887 + PGA1_c05220 0.30 -0.3 515,887 + PGA1_c05220 0.30 +0.4 515,887 + PGA1_c05220 0.30 +0.4 515,895 - PGA1_c05220 0.30 -2.0 515,895 - PGA1_c05220 0.30 +0.3 515,948 + PGA1_c05220 0.35 -0.4 515,953 + PGA1_c05220 0.35 -0.3 515,956 - PGA1_c05220 0.36 -0.8 516,004 + PGA1_c05220 0.40 +0.8 516,010 + PGA1_c05220 0.41 +1.4 516,018 - PGA1_c05220 0.41 +0.7 516,039 - PGA1_c05220 0.43 +0.9 516,077 + PGA1_c05220 0.47 -0.8 516,204 - PGA1_c05220 0.58 +0.9 516,209 - PGA1_c05220 0.58 -0.3 516,209 - PGA1_c05220 0.58 +0.0 516,219 + PGA1_c05220 0.59 +0.2 516,219 + PGA1_c05220 0.59 +0.6 516,257 + PGA1_c05220 0.63 -0.5 516,372 - PGA1_c05220 0.73 -0.2 516,431 + PGA1_c05220 0.78 +0.2 516,441 - PGA1_c05220 0.79 +0.6 516,587 + -1.1 516,592 + +0.7 516,711 - -0.3 516,751 + -1.7 516,768 + -1.1 516,783 + +0.1 516,783 - -0.5 516,791 - -0.1 516,815 + -1.3 516,829 + -0.9 516,837 - +0.3 516,945 - -0.5 516,958 - -0.3 516,962 + PGA1_c05230 0.10 -1.4 516,969 + PGA1_c05230 0.11 -0.1 516,970 - PGA1_c05230 0.11 +0.2 517,002 + PGA1_c05230 0.12 -1.0 517,002 + PGA1_c05230 0.12 -0.4 517,033 + PGA1_c05230 0.14 -0.0 517,041 - PGA1_c05230 0.15 +0.5 517,060 - PGA1_c05230 0.16 -0.2 517,070 - PGA1_c05230 0.16 +0.3 517,073 + PGA1_c05230 0.17 -0.3 517,073 + PGA1_c05230 0.17 -1.0 517,073 + PGA1_c05230 0.17 -0.1 517,091 + PGA1_c05230 0.18 -0.5 517,110 - PGA1_c05230 0.19 -1.9 517,173 + PGA1_c05230 0.22 -0.5 517,180 - PGA1_c05230 0.23 -0.5 517,198 - PGA1_c05230 0.24 -1.1 517,212 + PGA1_c05230 0.25 -1.1 517,212 + PGA1_c05230 0.25 -1.0 517,220 - PGA1_c05230 0.25 -0.9 517,246 + PGA1_c05230 0.27 -2.1 517,246 + PGA1_c05230 0.27 -0.9 517,246 + PGA1_c05230 0.27 +0.2 517,246 + PGA1_c05230 0.27 -0.6 517,254 - PGA1_c05230 0.27 +0.3 517,254 - PGA1_c05230 0.27 -1.0 517,254 - PGA1_c05230 0.27 -1.8 517,254 - PGA1_c05230 0.27 +0.2 517,254 - PGA1_c05230 0.27 -0.8 517,256 - PGA1_c05230 0.27 -0.7 517,318 + PGA1_c05230 0.31 -1.1 517,365 + PGA1_c05230 0.33 +0.2 517,378 - PGA1_c05230 0.34 -0.7 517,503 - PGA1_c05230 0.41 -2.2 517,505 + PGA1_c05230 0.41 +1.3 517,505 + PGA1_c05230 0.41 -1.5 517,513 - PGA1_c05230 0.42 -0.7 517,590 - PGA1_c05230 0.46 -1.4 517,761 - PGA1_c05230 0.56 -0.9 517,769 + PGA1_c05230 0.57 -1.8 517,826 + PGA1_c05230 0.60 -0.0 517,857 + PGA1_c05230 0.62 -2.4 517,878 + PGA1_c05230 0.63 -1.0 517,878 - PGA1_c05230 0.63 -0.7 517,886 + PGA1_c05230 0.63 -0.8 517,900 - PGA1_c05230 0.64 +0.2 517,931 - PGA1_c05230 0.66 -0.1 517,931 - PGA1_c05230 0.66 -0.8 517,960 + PGA1_c05230 0.68 -0.3 517,960 + PGA1_c05230 0.68 -0.6 517,968 - PGA1_c05230 0.68 -0.3 518,017 + PGA1_c05230 0.71 -1.9 518,017 + PGA1_c05230 0.71 +0.3 518,017 + PGA1_c05230 0.71 +0.0 518,017 + PGA1_c05230 0.71 +0.2 518,017 + PGA1_c05230 0.71 -0.5 518,025 - PGA1_c05230 0.71 -0.5 518,025 - PGA1_c05230 0.71 -0.6 518,025 - PGA1_c05230 0.71 -0.6 518,025 - PGA1_c05230 0.71 -2.1 518,025 - PGA1_c05230 0.71 -0.5 518,025 - PGA1_c05230 0.71 -0.5 518,025 - PGA1_c05230 0.71 -0.8 518,032 + PGA1_c05230 0.72 +0.2 518,040 - PGA1_c05230 0.72 -1.4 518,072 - PGA1_c05230 0.74 -0.5 518,097 + PGA1_c05230 0.76 +0.6 518,131 + PGA1_c05230 0.78 -2.1 518,139 - PGA1_c05230 0.78 -0.8 518,149 - PGA1_c05230 0.79 -0.7 518,149 - PGA1_c05230 0.79 -0.9 518,186 + PGA1_c05230 0.81 +0.5 518,193 + PGA1_c05230 0.81 -2.0 518,193 + PGA1_c05230 0.81 -1.3 518,193 + PGA1_c05230 0.81 +0.3 518,201 - PGA1_c05230 0.82 +2.7 518,201 - PGA1_c05230 0.82 -1.4 518,201 - PGA1_c05230 0.82 -0.7 518,201 - PGA1_c05230 0.82 -0.2 518,201 - PGA1_c05230 0.82 -0.6 518,211 - PGA1_c05230 0.82 -2.2 518,211 - PGA1_c05230 0.82 -2.2 518,211 - PGA1_c05230 0.82 -0.7 518,229 + PGA1_c05230 0.83 -0.4 518,243 + PGA1_c05230 0.84 -1.5 518,274 + PGA1_c05230 0.86 +0.2 518,274 + PGA1_c05230 0.86 +0.2 518,274 + PGA1_c05230 0.86 -1.1 518,311 + PGA1_c05230 0.88 -0.6 518,311 + PGA1_c05230 0.88 -3.5 518,311 + PGA1_c05230 0.88 -0.5 518,338 + PGA1_c05230 0.90 +0.6 518,338 + PGA1_c05230 0.90 +0.5 518,338 + PGA1_c05230 0.90 -0.1 518,338 + PGA1_c05230 0.90 +0.1 518,338 + PGA1_c05230 0.90 -1.2 518,346 - -0.4 518,346 - -0.4 518,346 - +0.1 518,346 - +0.6 518,346 - -0.4 518,346 - +0.3 518,348 + -0.4 518,355 - +0.5 518,356 - -0.5 518,356 - -0.3 518,397 + -1.2 518,397 + -1.4 518,397 + -1.0 518,400 - -1.4 518,454 + -0.7 518,458 - -0.3 518,462 - -1.6 518,512 - -0.6 518,536 + -0.2 518,536 + -0.7 518,544 - +0.5 518,583 + -1.2 518,591 - +0.1 518,680 - -0.0 518,693 + -1.1 518,694 - +0.5 518,701 - +2.0 518,731 + -0.2 518,803 + +0.7 518,838 + -0.1 518,898 + +0.7 518,967 + PGA1_c05240 0.11 -0.1 518,976 - PGA1_c05240 0.11 -0.4 519,024 + PGA1_c05240 0.16 +0.2 519,041 + PGA1_c05240 0.17 -1.5 519,058 + PGA1_c05240 0.19 +0.3 519,058 + PGA1_c05240 0.19 +0.3 519,066 - PGA1_c05240 0.19 +0.4 519,113 + PGA1_c05240 0.24 +0.0 519,113 + PGA1_c05240 0.24 +1.6 519,118 + PGA1_c05240 0.24 -0.0 519,134 - PGA1_c05240 0.25 -0.5 519,206 + PGA1_c05240 0.32 +0.2 519,206 + PGA1_c05240 0.32 +0.8 519,214 - PGA1_c05240 0.32 -0.3 519,214 - PGA1_c05240 0.32 +0.0 519,233 + PGA1_c05240 0.34 -1.8 519,256 + PGA1_c05240 0.36 -0.1 519,264 - PGA1_c05240 0.37 -0.6 519,264 - PGA1_c05240 0.37 -0.2 519,264 - PGA1_c05240 0.37 +0.5 519,264 - PGA1_c05240 0.37 +0.8 519,273 + PGA1_c05240 0.38 +0.2 519,306 - PGA1_c05240 0.41 -0.4 519,328 - PGA1_c05240 0.43 -0.4 519,342 + PGA1_c05240 0.44 +0.1 519,347 + PGA1_c05240 0.44 +0.4 519,434 - PGA1_c05240 0.52 +0.2 519,455 + PGA1_c05240 0.54 -0.0
Or see this region's nucleotide sequence