Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05200

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05180 and PGA1_c05190 overlap by 1 nucleotidesPGA1_c05190 and PGA1_c05200 are separated by 14 nucleotidesPGA1_c05200 and PGA1_c05210 overlap by 1 nucleotides PGA1_c05180: PGA1_c05180 - Predicted small integral membrane protein, at 512,480 to 512,758 _c05180 PGA1_c05190: PGA1_c05190 - ABC transporter, inner membrane component, at 512,758 to 513,555 _c05190 PGA1_c05200: PGA1_c05200 - putative ABC transporter, inner membrane component, at 513,570 to 514,433 _c05200 PGA1_c05210: PGA1_c05210 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 514,433 to 515,548 _c05210 Position (kb) 513 514 515Strain fitness (log2 ratio) -2 -1 0 1 2 3at 512.591 kb on - strand, within PGA1_c05180at 512.648 kb on - strand, within PGA1_c05180at 512.725 kb on - strand, within PGA1_c05180at 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.736 kb on + strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.865 kb on + strand, within PGA1_c05190at 512.873 kb on - strand, within PGA1_c05190at 512.901 kb on - strand, within PGA1_c05190at 512.936 kb on + strand, within PGA1_c05190at 512.944 kb on - strand, within PGA1_c05190at 512.944 kb on - strand, within PGA1_c05190at 512.963 kb on - strand, within PGA1_c05190at 512.997 kb on + strand, within PGA1_c05190at 512.997 kb on + strand, within PGA1_c05190at 512.997 kb on + strand, within PGA1_c05190at 513.002 kb on + strand, within PGA1_c05190at 513.002 kb on + strand, within PGA1_c05190at 513.010 kb on - strand, within PGA1_c05190at 513.046 kb on + strand, within PGA1_c05190at 513.054 kb on - strand, within PGA1_c05190at 513.054 kb on - strand, within PGA1_c05190at 513.068 kb on + strand, within PGA1_c05190at 513.121 kb on - strand, within PGA1_c05190at 513.166 kb on - strand, within PGA1_c05190at 513.170 kb on + strand, within PGA1_c05190at 513.172 kb on + strand, within PGA1_c05190at 513.178 kb on - strand, within PGA1_c05190at 513.239 kb on + strand, within PGA1_c05190at 513.249 kb on + strand, within PGA1_c05190at 513.291 kb on - strand, within PGA1_c05190at 513.315 kb on + strand, within PGA1_c05190at 513.315 kb on + strand, within PGA1_c05190at 513.402 kb on - strand, within PGA1_c05190at 513.420 kb on + strand, within PGA1_c05190at 513.428 kb on - strand, within PGA1_c05190at 513.428 kb on - strand, within PGA1_c05190at 513.527 kb on - strandat 513.565 kb on - strandat 513.575 kb on - strandat 513.598 kb on + strandat 513.598 kb on + strandat 513.598 kb on + strandat 513.606 kb on + strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.646 kb on - strandat 513.685 kb on - strand, within PGA1_c05200at 513.721 kb on - strand, within PGA1_c05200at 513.746 kb on + strand, within PGA1_c05200at 513.760 kb on + strand, within PGA1_c05200at 513.805 kb on + strand, within PGA1_c05200at 513.822 kb on - strand, within PGA1_c05200at 513.840 kb on + strand, within PGA1_c05200at 513.850 kb on + strand, within PGA1_c05200at 513.851 kb on - strand, within PGA1_c05200at 513.913 kb on - strand, within PGA1_c05200at 513.916 kb on + strand, within PGA1_c05200at 513.979 kb on - strand, within PGA1_c05200at 513.992 kb on + strand, within PGA1_c05200at 513.998 kb on + strand, within PGA1_c05200at 514.054 kb on + strand, within PGA1_c05200at 514.057 kb on - strand, within PGA1_c05200at 514.064 kb on + strand, within PGA1_c05200at 514.064 kb on + strand, within PGA1_c05200at 514.064 kb on + strand, within PGA1_c05200at 514.072 kb on - strand, within PGA1_c05200at 514.072 kb on - strand, within PGA1_c05200at 514.072 kb on - strand, within PGA1_c05200at 514.072 kb on - strand, within PGA1_c05200at 514.127 kb on + strand, within PGA1_c05200at 514.135 kb on - strand, within PGA1_c05200at 514.218 kb on + strand, within PGA1_c05200at 514.218 kb on + strand, within PGA1_c05200at 514.237 kb on - strand, within PGA1_c05200at 514.246 kb on + strand, within PGA1_c05200at 514.274 kb on + strand, within PGA1_c05200at 514.279 kb on + strand, within PGA1_c05200at 514.282 kb on - strand, within PGA1_c05200at 514.284 kb on + strand, within PGA1_c05200at 514.284 kb on + strand, within PGA1_c05200at 514.292 kb on - strand, within PGA1_c05200at 514.292 kb on - strand, within PGA1_c05200at 514.333 kb on + strand, within PGA1_c05200at 514.341 kb on - strand, within PGA1_c05200at 514.397 kb on + strandat 514.404 kb on + strandat 514.405 kb on - strandat 514.449 kb on + strandat 514.455 kb on + strandat 514.463 kb on - strandat 514.544 kb on - strandat 514.548 kb on + strand, within PGA1_c05210at 514.548 kb on + strand, within PGA1_c05210at 514.548 kb on + strand, within PGA1_c05210at 514.548 kb on - strand, within PGA1_c05210at 514.554 kb on + strand, within PGA1_c05210at 514.554 kb on + strand, within PGA1_c05210at 514.562 kb on - strand, within PGA1_c05210at 514.564 kb on + strand, within PGA1_c05210at 514.584 kb on + strand, within PGA1_c05210at 514.584 kb on + strand, within PGA1_c05210at 514.592 kb on - strand, within PGA1_c05210at 514.613 kb on + strand, within PGA1_c05210at 514.621 kb on - strand, within PGA1_c05210at 514.628 kb on - strand, within PGA1_c05210at 514.656 kb on + strand, within PGA1_c05210at 514.720 kb on - strand, within PGA1_c05210at 514.720 kb on - strand, within PGA1_c05210at 514.720 kb on - strand, within PGA1_c05210at 514.758 kb on - strand, within PGA1_c05210at 514.770 kb on + strand, within PGA1_c05210at 514.770 kb on + strand, within PGA1_c05210at 514.775 kb on + strand, within PGA1_c05210at 514.778 kb on - strand, within PGA1_c05210at 514.800 kb on - strand, within PGA1_c05210at 514.850 kb on + strand, within PGA1_c05210at 514.857 kb on + strand, within PGA1_c05210at 514.891 kb on - strand, within PGA1_c05210at 514.931 kb on + strand, within PGA1_c05210at 514.962 kb on - strand, within PGA1_c05210at 514.974 kb on + strand, within PGA1_c05210at 515.029 kb on - strand, within PGA1_c05210at 515.069 kb on + strand, within PGA1_c05210at 515.195 kb on + strand, within PGA1_c05210at 515.197 kb on + strand, within PGA1_c05210at 515.203 kb on - strand, within PGA1_c05210at 515.223 kb on + strand, within PGA1_c05210at 515.226 kb on - strand, within PGA1_c05210at 515.231 kb on - strand, within PGA1_c05210at 515.277 kb on + strand, within PGA1_c05210at 515.301 kb on + strand, within PGA1_c05210at 515.301 kb on + strand, within PGA1_c05210at 515.309 kb on - strand, within PGA1_c05210at 515.309 kb on - strand, within PGA1_c05210at 515.311 kb on + strand, within PGA1_c05210at 515.398 kb on - strand, within PGA1_c05210at 515.431 kb on + strand, within PGA1_c05210

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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512,591 - PGA1_c05180 0.40 +0.7
512,648 - PGA1_c05180 0.60 +1.0
512,725 - PGA1_c05180 0.88 +0.9
512,735 + +0.3
512,735 + +1.2
512,735 + +0.4
512,735 + -0.3
512,735 + +0.1
512,735 + +0.7
512,735 + +0.7
512,735 + +1.5
512,735 + +0.9
512,735 + -0.1
512,736 + +0.2
512,743 - +0.9
512,743 - +0.9
512,743 - -1.3
512,743 - +0.5
512,743 - +1.5
512,743 - +0.1
512,743 - +0.4
512,755 + +0.1
512,755 + -0.1
512,755 + +0.9
512,755 + -0.5
512,755 + -0.2
512,865 + PGA1_c05190 0.13 +0.5
512,873 - PGA1_c05190 0.14 +0.5
512,901 - PGA1_c05190 0.18 +1.1
512,936 + PGA1_c05190 0.22 +1.1
512,944 - PGA1_c05190 0.23 +0.6
512,944 - PGA1_c05190 0.23 +1.2
512,963 - PGA1_c05190 0.26 +0.4
512,997 + PGA1_c05190 0.30 +1.0
512,997 + PGA1_c05190 0.30 +0.0
512,997 + PGA1_c05190 0.30 +0.5
513,002 + PGA1_c05190 0.31 +0.7
513,002 + PGA1_c05190 0.31 +1.1
513,010 - PGA1_c05190 0.32 +1.8
513,046 + PGA1_c05190 0.36 -0.5
513,054 - PGA1_c05190 0.37 +0.9
513,054 - PGA1_c05190 0.37 +0.6
513,068 + PGA1_c05190 0.39 +0.5
513,121 - PGA1_c05190 0.45 -0.0
513,166 - PGA1_c05190 0.51 +0.7
513,170 + PGA1_c05190 0.52 +0.3
513,172 + PGA1_c05190 0.52 +0.1
513,178 - PGA1_c05190 0.53 +0.8
513,239 + PGA1_c05190 0.60 +1.0
513,249 + PGA1_c05190 0.62 +0.5
513,291 - PGA1_c05190 0.67 +1.3
513,315 + PGA1_c05190 0.70 +1.5
513,315 + PGA1_c05190 0.70 +0.6
513,402 - PGA1_c05190 0.81 +1.0
513,420 + PGA1_c05190 0.83 +1.2
513,428 - PGA1_c05190 0.84 -0.1
513,428 - PGA1_c05190 0.84 +0.4
513,527 - -0.4
513,565 - -0.9
513,575 - -0.5
513,598 + +0.2
513,598 + +0.5
513,598 + +0.2
513,606 + +0.5
513,606 - +0.5
513,606 - +0.4
513,606 - +1.3
513,606 - +0.5
513,606 - +1.3
513,606 - +1.0
513,646 - +0.3
513,685 - PGA1_c05200 0.13 +1.3
513,721 - PGA1_c05200 0.17 +0.2
513,746 + PGA1_c05200 0.20 +0.5
513,760 + PGA1_c05200 0.22 -0.3
513,805 + PGA1_c05200 0.27 +1.7
513,822 - PGA1_c05200 0.29 +0.3
513,840 + PGA1_c05200 0.31 +0.2
513,850 + PGA1_c05200 0.32 +1.5
513,851 - PGA1_c05200 0.33 +0.6
513,913 - PGA1_c05200 0.40 -1.0
513,916 + PGA1_c05200 0.40 +0.3
513,979 - PGA1_c05200 0.47 +0.2
513,992 + PGA1_c05200 0.49 +1.8
513,998 + PGA1_c05200 0.50 +0.4
514,054 + PGA1_c05200 0.56 +0.5
514,057 - PGA1_c05200 0.56 +0.7
514,064 + PGA1_c05200 0.57 -0.5
514,064 + PGA1_c05200 0.57 +0.7
514,064 + PGA1_c05200 0.57 -0.0
514,072 - PGA1_c05200 0.58 +1.0
514,072 - PGA1_c05200 0.58 +1.0
514,072 - PGA1_c05200 0.58 +0.7
514,072 - PGA1_c05200 0.58 +0.6
514,127 + PGA1_c05200 0.64 +0.7
514,135 - PGA1_c05200 0.65 +0.7
514,218 + PGA1_c05200 0.75 +1.8
514,218 + PGA1_c05200 0.75 +0.7
514,237 - PGA1_c05200 0.77 +2.4
514,246 + PGA1_c05200 0.78 +0.0
514,274 + PGA1_c05200 0.81 +1.2
514,279 + PGA1_c05200 0.82 +0.0
514,282 - PGA1_c05200 0.82 -0.1
514,284 + PGA1_c05200 0.83 -0.9
514,284 + PGA1_c05200 0.83 -1.0
514,292 - PGA1_c05200 0.84 +1.3
514,292 - PGA1_c05200 0.84 +0.3
514,333 + PGA1_c05200 0.88 +0.3
514,341 - PGA1_c05200 0.89 +0.4
514,397 + +0.9
514,404 + +1.1
514,405 - +1.1
514,449 + +0.7
514,455 + +0.0
514,463 - -2.1
514,544 - +0.3
514,548 + PGA1_c05210 0.10 -0.3
514,548 + PGA1_c05210 0.10 +0.8
514,548 + PGA1_c05210 0.10 +0.6
514,548 - PGA1_c05210 0.10 -0.5
514,554 + PGA1_c05210 0.11 +1.9
514,554 + PGA1_c05210 0.11 +1.5
514,562 - PGA1_c05210 0.12 +1.5
514,564 + PGA1_c05210 0.12 +1.1
514,584 + PGA1_c05210 0.14 +0.7
514,584 + PGA1_c05210 0.14 +2.9
514,592 - PGA1_c05210 0.14 +0.3
514,613 + PGA1_c05210 0.16 +0.1
514,621 - PGA1_c05210 0.17 +0.5
514,628 - PGA1_c05210 0.17 +0.2
514,656 + PGA1_c05210 0.20 +1.1
514,720 - PGA1_c05210 0.26 +1.5
514,720 - PGA1_c05210 0.26 +1.1
514,720 - PGA1_c05210 0.26 +0.2
514,758 - PGA1_c05210 0.29 +0.5
514,770 + PGA1_c05210 0.30 -0.4
514,770 + PGA1_c05210 0.30 -1.9
514,775 + PGA1_c05210 0.31 +1.2
514,778 - PGA1_c05210 0.31 -0.7
514,800 - PGA1_c05210 0.33 +0.9
514,850 + PGA1_c05210 0.37 -0.3
514,857 + PGA1_c05210 0.38 +0.4
514,891 - PGA1_c05210 0.41 +0.7
514,931 + PGA1_c05210 0.45 +1.6
514,962 - PGA1_c05210 0.47 +0.7
514,974 + PGA1_c05210 0.48 -0.3
515,029 - PGA1_c05210 0.53 +1.2
515,069 + PGA1_c05210 0.57 -0.4
515,195 + PGA1_c05210 0.68 +0.3
515,197 + PGA1_c05210 0.68 +1.3
515,203 - PGA1_c05210 0.69 +0.8
515,223 + PGA1_c05210 0.71 -0.6
515,226 - PGA1_c05210 0.71 +0.9
515,231 - PGA1_c05210 0.72 +0.3
515,277 + PGA1_c05210 0.76 -0.4
515,301 + PGA1_c05210 0.78 +0.1
515,301 + PGA1_c05210 0.78 +0.1
515,309 - PGA1_c05210 0.78 +0.5
515,309 - PGA1_c05210 0.78 -2.1
515,311 + PGA1_c05210 0.79 +0.1
515,398 - PGA1_c05210 0.86 +0.5
515,431 + PGA1_c05210 0.89 +1.8

Or see this region's nucleotide sequence