Strain Fitness in Dechlorosoma suillum PS around Dsui_3461

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3459 and Dsui_3460 are separated by 1 nucleotidesDsui_3460 and Dsui_3461 are separated by 150 nucleotidesDsui_3461 and Dsui_3462 are separated by 335 nucleotides Dsui_3459: Dsui_3459 - septum site-determining protein MinD, at 3,722,111 to 3,722,923 _3459 Dsui_3460: Dsui_3460 - cell division topological specificity factor MinE, at 3,722,925 to 3,723,191 _3460 Dsui_3461: Dsui_3461 - hypothetical protein, at 3,723,342 to 3,724,892 _3461 Dsui_3462: Dsui_3462 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 3,725,228 to 3,726,214 _3462 Position (kb) 3723 3724 3725Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3722.346 kb on + strand, within Dsui_3459at 3722.444 kb on + strand, within Dsui_3459at 3722.590 kb on + strand, within Dsui_3459at 3722.649 kb on + strand, within Dsui_3459at 3722.649 kb on - strandat 3722.691 kb on + strand, within Dsui_3459at 3722.766 kb on + strand, within Dsui_3459at 3722.861 kb on + strandat 3723.247 kb on + strandat 3723.459 kb on - strandat 3723.759 kb on + strandat 3723.831 kb on + strand, within Dsui_3461at 3723.884 kb on + strand, within Dsui_3461at 3723.908 kb on + strandat 3723.913 kb on + strandat 3723.921 kb on - strand, within Dsui_3461at 3724.019 kb on - strandat 3724.093 kb on + strandat 3724.150 kb on + strandat 3724.150 kb on + strandat 3724.158 kb on - strandat 3724.306 kb on - strandat 3724.367 kb on + strandat 3724.409 kb on - strandat 3724.744 kb on + strandat 3724.800 kb on + strandat 3724.808 kb on - strandat 3725.027 kb on - strandat 3725.027 kb on - strandat 3725.095 kb on + strandat 3725.103 kb on - strandat 3725.154 kb on + strandat 3725.251 kb on - strandat 3725.313 kb on + strandat 3725.347 kb on + strand, within Dsui_3462at 3725.397 kb on + strand, within Dsui_3462at 3725.464 kb on - strandat 3725.503 kb on + strand, within Dsui_3462at 3725.526 kb on - strandat 3725.526 kb on - strand, within Dsui_3462at 3725.594 kb on - strand, within Dsui_3462at 3725.624 kb on + strand, within Dsui_3462at 3725.888 kb on + strand, within Dsui_3462

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
remove
3,722,346 + Dsui_3459 0.29 -1.0
3,722,444 + Dsui_3459 0.41 -1.3
3,722,590 + Dsui_3459 0.59 -1.8
3,722,649 + Dsui_3459 0.66 -1.9
3,722,649 - +0.2
3,722,691 + Dsui_3459 0.71 -1.6
3,722,766 + Dsui_3459 0.81 -0.7
3,722,861 + -0.6
3,723,247 + +0.6
3,723,459 - +0.1
3,723,759 + +0.8
3,723,831 + Dsui_3461 0.32 +3.1
3,723,884 + Dsui_3461 0.35 -0.9
3,723,908 + +0.8
3,723,913 + +1.1
3,723,921 - Dsui_3461 0.37 +1.0
3,724,019 - +0.8
3,724,093 + -1.1
3,724,150 + +2.4
3,724,150 + -1.8
3,724,158 - +0.8
3,724,306 - +0.0
3,724,367 + -0.1
3,724,409 - -0.4
3,724,744 + -2.9
3,724,800 + +0.8
3,724,808 - +2.4
3,725,027 - -0.6
3,725,027 - +0.5
3,725,095 + +0.8
3,725,103 - -0.3
3,725,154 + -0.4
3,725,251 - +0.8
3,725,313 + -0.5
3,725,347 + Dsui_3462 0.12 -0.4
3,725,397 + Dsui_3462 0.17 -1.2
3,725,464 - +2.8
3,725,503 + Dsui_3462 0.28 -1.0
3,725,526 - +0.8
3,725,526 - Dsui_3462 0.30 -0.6
3,725,594 - Dsui_3462 0.37 +0.8
3,725,624 + Dsui_3462 0.40 -1.2
3,725,888 + Dsui_3462 0.67 -0.4

Or see this region's nucleotide sequence