Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3261 and Dsui_3262 are separated by 16 nucleotides Dsui_3262 and Dsui_3263 are separated by 148 nucleotides Dsui_3263 and Dsui_3264 are separated by 20 nucleotides Dsui_3264 and Dsui_3265 overlap by 50 nucleotides
Dsui_3261: Dsui_3261 - 6-phosphofructokinase, at 3,501,266 to 3,502,534
_3261
Dsui_3262: Dsui_3262 - adenylate kinase family protein, at 3,502,551 to 3,503,204
_3262
Dsui_3263: Dsui_3263 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 3,503,353 to 3,504,132
_3263
Dsui_3264: Dsui_3264 - hypothetical protein, at 3,504,153 to 3,504,329
_3264
Dsui_3265: Dsui_3265 - tetraacyldisaccharide 4''-kinase, at 3,504,280 to 3,505,371
_3265
Position (kb)
3503
3504
3505 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3502.363 kb on - strand, within Dsui_3261 at 3502.375 kb on + strand, within Dsui_3261 at 3502.483 kb on + strand at 3502.557 kb on - strand at 3503.242 kb on - strand at 3503.285 kb on - strand at 3503.285 kb on - strand at 3503.286 kb on - strand at 3503.300 kb on + strand at 3503.308 kb on - strand at 3503.308 kb on - strand at 3503.308 kb on - strand at 3503.331 kb on - strand at 3503.333 kb on - strand at 3503.333 kb on - strand at 3504.142 kb on - strand at 3504.167 kb on + strand at 3504.167 kb on + strand at 3504.175 kb on - strand, within Dsui_3264
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 3,502,363 - Dsui_3261 0.86 -2.0 3,502,375 + Dsui_3261 0.87 -1.1 3,502,483 + -1.0 3,502,557 - +0.8 3,503,242 - +2.3 3,503,285 - -0.2 3,503,285 - -0.3 3,503,286 - -0.5 3,503,300 + -0.1 3,503,308 - -0.4 3,503,308 - -0.4 3,503,308 - -0.1 3,503,331 - -1.1 3,503,333 - -1.0 3,503,333 - -0.3 3,504,142 - -0.1 3,504,167 + +0.8 3,504,167 + +0.8 3,504,175 - Dsui_3264 0.12 +0.0
Or see this region's nucleotide sequence