Strain Fitness in Dechlorosoma suillum PS around Dsui_3263

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3261 and Dsui_3262 are separated by 16 nucleotidesDsui_3262 and Dsui_3263 are separated by 148 nucleotidesDsui_3263 and Dsui_3264 are separated by 20 nucleotidesDsui_3264 and Dsui_3265 overlap by 50 nucleotides Dsui_3261: Dsui_3261 - 6-phosphofructokinase, at 3,501,266 to 3,502,534 _3261 Dsui_3262: Dsui_3262 - adenylate kinase family protein, at 3,502,551 to 3,503,204 _3262 Dsui_3263: Dsui_3263 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 3,503,353 to 3,504,132 _3263 Dsui_3264: Dsui_3264 - hypothetical protein, at 3,504,153 to 3,504,329 _3264 Dsui_3265: Dsui_3265 - tetraacyldisaccharide 4''-kinase, at 3,504,280 to 3,505,371 _3265 Position (kb) 3503 3504 3505Strain fitness (log2 ratio) -2 -1 0 1 2at 3502.363 kb on - strand, within Dsui_3261at 3502.375 kb on + strand, within Dsui_3261at 3502.483 kb on + strandat 3502.557 kb on - strandat 3503.242 kb on - strandat 3503.285 kb on - strandat 3503.285 kb on - strandat 3503.286 kb on - strandat 3503.300 kb on + strandat 3503.308 kb on - strandat 3503.308 kb on - strandat 3503.308 kb on - strandat 3503.331 kb on - strandat 3503.333 kb on - strandat 3503.333 kb on - strandat 3504.142 kb on - strandat 3504.167 kb on + strandat 3504.167 kb on + strandat 3504.175 kb on - strand, within Dsui_3264

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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3,502,363 - Dsui_3261 0.86 -2.0
3,502,375 + Dsui_3261 0.87 -1.1
3,502,483 + -1.0
3,502,557 - +0.8
3,503,242 - +2.3
3,503,285 - -0.2
3,503,285 - -0.3
3,503,286 - -0.5
3,503,300 + -0.1
3,503,308 - -0.4
3,503,308 - -0.4
3,503,308 - -0.1
3,503,331 - -1.1
3,503,333 - -1.0
3,503,333 - -0.3
3,504,142 - -0.1
3,504,167 + +0.8
3,504,167 + +0.8
3,504,175 - Dsui_3264 0.12 +0.0

Or see this region's nucleotide sequence