Strain Fitness in Dechlorosoma suillum PS around Dsui_3194

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3192 and Dsui_3193 are separated by 143 nucleotidesDsui_3193 and Dsui_3194 overlap by 4 nucleotidesDsui_3194 and Dsui_3195 overlap by 4 nucleotidesDsui_3195 and Dsui_3196 are separated by 130 nucleotides Dsui_3192: Dsui_3192 - tryptophan synthase, beta subunit, at 3,426,241 to 3,427,437 _3192 Dsui_3193: Dsui_3193 - phosphoribosylanthranilate isomerase, at 3,427,581 to 3,428,228 _3193 Dsui_3194: Dsui_3194 - pseudouridylate synthase I, at 3,428,225 to 3,429,052 _3194 Dsui_3195: Dsui_3195 - Cobalt transport protein, at 3,429,049 to 3,429,678 _3195 Dsui_3196: Dsui_3196 - FimV N-terminal domain protein, at 3,429,809 to 3,432,817 _3196 Position (kb) 3428 3429 3430Strain fitness (log2 ratio) -2 -1 0 1 2at 3428.262 kb on - strandat 3428.313 kb on - strand, within Dsui_3194at 3428.394 kb on + strand, within Dsui_3194at 3428.402 kb on - strand, within Dsui_3194at 3428.427 kb on - strand, within Dsui_3194at 3428.454 kb on - strand, within Dsui_3194at 3428.574 kb on + strandat 3428.582 kb on - strandat 3428.582 kb on - strand, within Dsui_3194at 3428.621 kb on - strand, within Dsui_3194at 3428.665 kb on - strand, within Dsui_3194at 3428.683 kb on - strand, within Dsui_3194at 3428.992 kb on + strandat 3428.993 kb on + strandat 3429.012 kb on - strandat 3429.027 kb on - strandat 3429.027 kb on - strandat 3429.066 kb on - strandat 3429.290 kb on - strand, within Dsui_3195at 3429.407 kb on - strandat 3429.431 kb on - strandat 3429.581 kb on + strandat 3429.826 kb on + strandat 3429.897 kb on - strandat 3430.022 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
remove
3,428,262 - -0.1
3,428,313 - Dsui_3194 0.11 +0.7
3,428,394 + Dsui_3194 0.20 -1.8
3,428,402 - Dsui_3194 0.21 +0.7
3,428,427 - Dsui_3194 0.24 -0.3
3,428,454 - Dsui_3194 0.28 +0.2
3,428,574 + +1.1
3,428,582 - -0.4
3,428,582 - Dsui_3194 0.43 -0.6
3,428,621 - Dsui_3194 0.48 -1.8
3,428,665 - Dsui_3194 0.53 -0.7
3,428,683 - Dsui_3194 0.55 +1.3
3,428,992 + +0.7
3,428,993 + +1.7
3,429,012 - -0.3
3,429,027 - +1.9
3,429,027 - -0.3
3,429,066 - -0.0
3,429,290 - Dsui_3195 0.38 +0.7
3,429,407 - +2.7
3,429,431 - +1.7
3,429,581 + +0.7
3,429,826 + -1.2
3,429,897 - -0.0
3,430,022 - +0.2

Or see this region's nucleotide sequence