Strain Fitness in Dechlorosoma suillum PS around Dsui_3127

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3126 and Dsui_3127 are separated by 201 nucleotidesDsui_3127 and Dsui_3128 are separated by 16 nucleotides Dsui_3126: Dsui_3126 - heme d1 biosynthesis radical SAM protein NirJ, at 3,348,006 to 3,349,169 _3126 Dsui_3127: Dsui_3127 - 23S RNA-specific pseudouridylate synthase, at 3,349,371 to 3,350,117 _3127 Dsui_3128: Dsui_3128 - ribonuclease R, at 3,350,134 to 3,352,620 _3128 Position (kb) 3349 3350 3351Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3348.381 kb on - strand, within Dsui_3126at 3348.400 kb on - strand, within Dsui_3126at 3348.418 kb on - strand, within Dsui_3126at 3348.461 kb on - strand, within Dsui_3126at 3348.521 kb on + strandat 3348.599 kb on + strandat 3348.604 kb on + strand, within Dsui_3126at 3348.607 kb on - strandat 3348.612 kb on - strand, within Dsui_3126at 3348.668 kb on + strand, within Dsui_3126at 3348.761 kb on + strandat 3348.769 kb on - strand, within Dsui_3126at 3348.853 kb on - strand, within Dsui_3126at 3348.918 kb on - strand, within Dsui_3126at 3348.923 kb on - strand, within Dsui_3126at 3348.969 kb on - strand, within Dsui_3126at 3348.987 kb on + strand, within Dsui_3126at 3349.054 kb on - strandat 3349.058 kb on + strandat 3349.066 kb on - strandat 3349.085 kb on - strandat 3349.177 kb on + strandat 3349.234 kb on + strandat 3349.234 kb on + strandat 3349.245 kb on - strandat 3349.252 kb on - strandat 3349.336 kb on - strandat 3349.341 kb on + strandat 3349.616 kb on + strand, within Dsui_3127at 3349.621 kb on + strand, within Dsui_3127at 3349.778 kb on - strandat 3350.016 kb on - strand, within Dsui_3127at 3350.065 kb on - strandat 3350.080 kb on - strandat 3350.468 kb on + strand, within Dsui_3128at 3350.562 kb on + strand, within Dsui_3128at 3350.589 kb on + strand, within Dsui_3128at 3350.626 kb on + strand, within Dsui_3128at 3350.776 kb on - strand, within Dsui_3128at 3350.853 kb on + strand, within Dsui_3128at 3350.853 kb on + strandat 3350.861 kb on - strand, within Dsui_3128at 3350.895 kb on - strandat 3350.896 kb on - strand, within Dsui_3128at 3350.954 kb on - strand, within Dsui_3128at 3350.961 kb on + strand, within Dsui_3128at 3350.969 kb on - strand, within Dsui_3128at 3350.996 kb on + strandat 3351.003 kb on - strand, within Dsui_3128at 3351.004 kb on - strand, within Dsui_3128at 3351.028 kb on - strandat 3351.032 kb on + strand, within Dsui_3128

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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3,348,381 - Dsui_3126 0.32 -0.4
3,348,400 - Dsui_3126 0.34 +1.6
3,348,418 - Dsui_3126 0.35 -1.3
3,348,461 - Dsui_3126 0.39 -1.2
3,348,521 + -1.9
3,348,599 + +0.7
3,348,604 + Dsui_3126 0.51 -0.1
3,348,607 - +1.1
3,348,612 - Dsui_3126 0.52 +2.0
3,348,668 + Dsui_3126 0.57 -2.6
3,348,761 + -0.9
3,348,769 - Dsui_3126 0.66 -1.4
3,348,853 - Dsui_3126 0.73 -0.5
3,348,918 - Dsui_3126 0.78 -1.4
3,348,923 - Dsui_3126 0.79 -1.6
3,348,969 - Dsui_3126 0.83 -1.4
3,348,987 + Dsui_3126 0.84 +2.3
3,349,054 - -1.4
3,349,058 + -1.2
3,349,066 - -1.9
3,349,085 - -1.3
3,349,177 + +0.7
3,349,234 + -0.9
3,349,234 + -0.7
3,349,245 - +1.5
3,349,252 - +0.7
3,349,336 - -0.5
3,349,341 + +0.6
3,349,616 + Dsui_3127 0.33 +0.8
3,349,621 + Dsui_3127 0.33 -0.4
3,349,778 - +0.7
3,350,016 - Dsui_3127 0.86 -0.4
3,350,065 - -0.6
3,350,080 - +0.5
3,350,468 + Dsui_3128 0.13 +3.0
3,350,562 + Dsui_3128 0.17 +0.4
3,350,589 + Dsui_3128 0.18 +0.7
3,350,626 + Dsui_3128 0.20 -0.6
3,350,776 - Dsui_3128 0.26 +0.1
3,350,853 + Dsui_3128 0.29 +2.3
3,350,853 + -0.9
3,350,861 - Dsui_3128 0.29 -0.2
3,350,895 - +0.7
3,350,896 - Dsui_3128 0.31 -0.5
3,350,954 - Dsui_3128 0.33 +0.3
3,350,961 + Dsui_3128 0.33 +1.9
3,350,969 - Dsui_3128 0.34 +0.4
3,350,996 + +0.4
3,351,003 - Dsui_3128 0.35 +1.0
3,351,004 - Dsui_3128 0.35 +0.2
3,351,028 - +1.7
3,351,032 + Dsui_3128 0.36 -0.9

Or see this region's nucleotide sequence