Strain Fitness in Dechlorosoma suillum PS around Dsui_2521

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2520 and Dsui_2521 are separated by 76 nucleotidesDsui_2521 and Dsui_2522 are separated by 85 nucleotidesDsui_2522 and Dsui_2523 are separated by 142 nucleotidesDsui_2523 and Dsui_2524 are separated by 49 nucleotides Dsui_2520: Dsui_2520 - flagellar basal-body rod protein FlgF, at 2,671,915 to 2,672,661 _2520 Dsui_2521: Dsui_2521 - cysteine synthase A, at 2,672,738 to 2,673,724 _2521 Dsui_2522: Dsui_2522 - hypothetical protein, at 2,673,810 to 2,673,932 _2522 Dsui_2523: Dsui_2523 - hypothetical protein, at 2,674,075 to 2,674,617 _2523 Dsui_2524: Dsui_2524 - putative conserved small protein, at 2,674,667 to 2,675,002 _2524 Position (kb) 2672 2673 2674Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2671.926 kb on + strandat 2671.986 kb on + strandat 2671.989 kb on - strandat 2672.054 kb on + strand, within Dsui_2520at 2672.094 kb on - strand, within Dsui_2520at 2672.127 kb on + strand, within Dsui_2520at 2672.131 kb on - strand, within Dsui_2520at 2672.131 kb on - strand, within Dsui_2520at 2672.131 kb on - strand, within Dsui_2520at 2672.131 kb on - strand, within Dsui_2520at 2672.131 kb on - strand, within Dsui_2520at 2672.131 kb on - strand, within Dsui_2520at 2672.133 kb on - strandat 2672.133 kb on - strandat 2672.152 kb on - strand, within Dsui_2520at 2672.172 kb on - strand, within Dsui_2520at 2672.172 kb on - strand, within Dsui_2520at 2672.224 kb on + strand, within Dsui_2520at 2672.392 kb on + strand, within Dsui_2520at 2672.422 kb on - strand, within Dsui_2520at 2672.492 kb on + strand, within Dsui_2520at 2672.534 kb on + strand, within Dsui_2520at 2672.595 kb on + strandat 2672.656 kb on + strandat 2672.656 kb on + strandat 2672.664 kb on - strandat 2672.664 kb on - strandat 2672.664 kb on - strandat 2672.664 kb on - strandat 2672.664 kb on - strandat 2672.674 kb on - strandat 2672.690 kb on + strandat 2672.735 kb on + strandat 2672.739 kb on - strandat 2672.743 kb on + strandat 2672.743 kb on + strandat 2672.743 kb on + strandat 2672.751 kb on - strandat 2672.784 kb on + strandat 2672.803 kb on + strandat 2672.825 kb on + strandat 2672.889 kb on - strand, within Dsui_2521at 2672.902 kb on + strand, within Dsui_2521at 2672.902 kb on + strand, within Dsui_2521at 2672.988 kb on + strand, within Dsui_2521at 2673.010 kb on - strand, within Dsui_2521at 2673.033 kb on - strand, within Dsui_2521at 2673.086 kb on - strand, within Dsui_2521at 2673.102 kb on - strand, within Dsui_2521at 2673.123 kb on - strand, within Dsui_2521at 2673.165 kb on + strand, within Dsui_2521at 2673.166 kb on + strand, within Dsui_2521at 2673.209 kb on - strand, within Dsui_2521at 2673.260 kb on + strand, within Dsui_2521at 2673.268 kb on - strand, within Dsui_2521at 2673.268 kb on - strand, within Dsui_2521at 2673.375 kb on + strand, within Dsui_2521at 2673.431 kb on + strandat 2673.444 kb on - strand, within Dsui_2521at 2673.473 kb on - strand, within Dsui_2521at 2673.489 kb on + strand, within Dsui_2521at 2673.499 kb on + strand, within Dsui_2521at 2673.675 kb on + strandat 2673.675 kb on + strandat 2673.683 kb on - strandat 2673.718 kb on + strandat 2673.718 kb on + strandat 2673.726 kb on - strandat 2673.726 kb on - strandat 2673.726 kb on - strandat 2673.726 kb on - strandat 2673.726 kb on - strandat 2673.726 kb on - strandat 2673.726 kb on - strandat 2673.739 kb on + strandat 2673.749 kb on + strandat 2673.749 kb on + strandat 2673.749 kb on + strandat 2673.749 kb on + strandat 2673.757 kb on - strandat 2673.757 kb on - strandat 2673.757 kb on - strandat 2673.757 kb on - strandat 2673.757 kb on - strandat 2673.830 kb on - strand, within Dsui_2522at 2673.850 kb on + strand, within Dsui_2522at 2673.850 kb on + strand, within Dsui_2522at 2673.911 kb on - strand, within Dsui_2522at 2673.960 kb on + strandat 2673.986 kb on + strandat 2674.132 kb on + strand, within Dsui_2523at 2674.146 kb on + strand, within Dsui_2523at 2674.146 kb on + strand, within Dsui_2523at 2674.183 kb on + strand, within Dsui_2523at 2674.272 kb on + strand, within Dsui_2523at 2674.353 kb on + strand, within Dsui_2523at 2674.366 kb on - strand, within Dsui_2523at 2674.373 kb on + strand, within Dsui_2523at 2674.404 kb on - strand, within Dsui_2523at 2674.503 kb on + strand, within Dsui_2523

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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2,671,926 + +0.7
2,671,986 + -0.1
2,671,989 - +0.7
2,672,054 + Dsui_2520 0.19 -1.1
2,672,094 - Dsui_2520 0.24 +0.8
2,672,127 + Dsui_2520 0.28 +0.8
2,672,131 - Dsui_2520 0.29 -0.6
2,672,131 - Dsui_2520 0.29 -0.6
2,672,131 - Dsui_2520 0.29 +0.7
2,672,131 - Dsui_2520 0.29 -2.3
2,672,131 - Dsui_2520 0.29 -0.3
2,672,131 - Dsui_2520 0.29 -0.5
2,672,133 - +3.9
2,672,133 - +0.7
2,672,152 - Dsui_2520 0.32 -0.6
2,672,172 - Dsui_2520 0.34 +0.1
2,672,172 - Dsui_2520 0.34 +0.7
2,672,224 + Dsui_2520 0.41 -0.7
2,672,392 + Dsui_2520 0.64 -1.3
2,672,422 - Dsui_2520 0.68 +0.7
2,672,492 + Dsui_2520 0.77 -1.1
2,672,534 + Dsui_2520 0.83 -2.8
2,672,595 + -0.1
2,672,656 + +1.7
2,672,656 + +0.7
2,672,664 - +3.5
2,672,664 - -0.7
2,672,664 - -0.2
2,672,664 - -2.2
2,672,664 - +0.6
2,672,674 - -0.6
2,672,690 + -0.9
2,672,735 + +0.2
2,672,739 - +0.8
2,672,743 + +1.7
2,672,743 + +0.1
2,672,743 + -0.3
2,672,751 - -1.0
2,672,784 + -2.9
2,672,803 + -1.0
2,672,825 + +0.5
2,672,889 - Dsui_2521 0.15 -0.3
2,672,902 + Dsui_2521 0.17 +2.3
2,672,902 + Dsui_2521 0.17 -1.6
2,672,988 + Dsui_2521 0.25 -1.4
2,673,010 - Dsui_2521 0.28 -1.5
2,673,033 - Dsui_2521 0.30 +0.7
2,673,086 - Dsui_2521 0.35 +0.0
2,673,102 - Dsui_2521 0.37 -3.4
2,673,123 - Dsui_2521 0.39 -0.1
2,673,165 + Dsui_2521 0.43 -1.1
2,673,166 + Dsui_2521 0.43 +0.4
2,673,209 - Dsui_2521 0.48 +2.0
2,673,260 + Dsui_2521 0.53 -0.3
2,673,268 - Dsui_2521 0.54 -1.7
2,673,268 - Dsui_2521 0.54 -2.3
2,673,375 + Dsui_2521 0.65 -0.9
2,673,431 + -2.1
2,673,444 - Dsui_2521 0.72 -0.9
2,673,473 - Dsui_2521 0.74 -0.7
2,673,489 + Dsui_2521 0.76 +1.7
2,673,499 + Dsui_2521 0.77 +0.7
2,673,675 + +0.2
2,673,675 + +1.3
2,673,683 - -0.4
2,673,718 + +3.8
2,673,718 + -1.2
2,673,726 - -0.1
2,673,726 - -1.4
2,673,726 - -1.0
2,673,726 - -0.4
2,673,726 - -0.5
2,673,726 - -0.2
2,673,726 - +0.2
2,673,739 + +0.4
2,673,749 + +1.4
2,673,749 + +1.7
2,673,749 + -0.0
2,673,749 + +1.7
2,673,757 - -0.7
2,673,757 - -0.0
2,673,757 - +0.4
2,673,757 - +0.5
2,673,757 - -0.4
2,673,830 - Dsui_2522 0.16 -0.3
2,673,850 + Dsui_2522 0.33 -2.1
2,673,850 + Dsui_2522 0.33 -1.9
2,673,911 - Dsui_2522 0.82 +0.7
2,673,960 + -1.6
2,673,986 + -0.7
2,674,132 + Dsui_2523 0.10 -0.5
2,674,146 + Dsui_2523 0.13 -0.5
2,674,146 + Dsui_2523 0.13 -0.6
2,674,183 + Dsui_2523 0.20 +0.7
2,674,272 + Dsui_2523 0.36 +0.7
2,674,353 + Dsui_2523 0.51 +0.7
2,674,366 - Dsui_2523 0.54 +0.3
2,674,373 + Dsui_2523 0.55 +0.3
2,674,404 - Dsui_2523 0.61 -0.6
2,674,503 + Dsui_2523 0.79 +1.3

Or see this region's nucleotide sequence