Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2418 and Dsui_2419 are separated by 129 nucleotides Dsui_2419 and Dsui_2420 are separated by 99 nucleotides
Dsui_2418: Dsui_2418 - peptide chain release factor 3, at 2,572,808 to 2,574,409
_2418
Dsui_2419: Dsui_2419 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,574,539 to 2,577,538
_2419
Dsui_2420: Dsui_2420 - uncharacterized radical SAM protein YgiQ, at 2,577,638 to 2,579,956
_2420
Position (kb)
2574
2575
2576
2577
2578 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2573.545 kb on + strand, within Dsui_2418 at 2573.637 kb on + strand, within Dsui_2418 at 2573.715 kb on - strand, within Dsui_2418 at 2573.752 kb on + strand, within Dsui_2418 at 2573.760 kb on - strand at 2573.766 kb on + strand, within Dsui_2418 at 2573.838 kb on + strand, within Dsui_2418 at 2573.846 kb on - strand, within Dsui_2418 at 2573.859 kb on + strand, within Dsui_2418 at 2573.991 kb on + strand, within Dsui_2418 at 2574.019 kb on + strand, within Dsui_2418 at 2574.028 kb on + strand, within Dsui_2418 at 2574.028 kb on + strand, within Dsui_2418 at 2574.038 kb on + strand, within Dsui_2418 at 2574.046 kb on - strand at 2574.106 kb on + strand, within Dsui_2418 at 2574.142 kb on + strand, within Dsui_2418 at 2574.324 kb on + strand at 2574.332 kb on - strand at 2574.369 kb on - strand at 2574.384 kb on + strand at 2574.384 kb on + strand at 2574.416 kb on - strand at 2574.535 kb on + strand at 2574.551 kb on + strand at 2574.563 kb on - strand at 2574.591 kb on + strand at 2574.591 kb on + strand at 2574.591 kb on + strand at 2574.591 kb on + strand at 2574.591 kb on + strand at 2574.591 kb on + strand at 2574.591 kb on + strand at 2574.594 kb on - strand at 2574.793 kb on + strand at 2574.803 kb on + strand at 2574.949 kb on - strand at 2574.965 kb on - strand at 2574.971 kb on - strand, within Dsui_2419 at 2575.010 kb on - strand at 2575.059 kb on + strand, within Dsui_2419 at 2575.110 kb on + strand, within Dsui_2419 at 2575.118 kb on - strand, within Dsui_2419 at 2575.233 kb on + strand, within Dsui_2419 at 2575.287 kb on + strand, within Dsui_2419 at 2575.295 kb on - strand at 2575.393 kb on + strand, within Dsui_2419 at 2575.404 kb on + strand, within Dsui_2419 at 2575.412 kb on - strand at 2575.422 kb on - strand at 2575.440 kb on - strand at 2575.635 kb on - strand at 2575.749 kb on + strand, within Dsui_2419 at 2575.841 kb on + strand, within Dsui_2419 at 2575.869 kb on - strand at 2575.898 kb on - strand at 2575.899 kb on + strand, within Dsui_2419 at 2575.922 kb on + strand, within Dsui_2419 at 2575.931 kb on - strand at 2575.986 kb on + strand, within Dsui_2419 at 2576.002 kb on - strand, within Dsui_2419 at 2576.068 kb on - strand at 2576.075 kb on + strand, within Dsui_2419 at 2576.075 kb on + strand, within Dsui_2419 at 2576.080 kb on + strand, within Dsui_2419 at 2576.083 kb on - strand, within Dsui_2419 at 2576.084 kb on - strand, within Dsui_2419 at 2576.097 kb on + strand, within Dsui_2419 at 2576.133 kb on - strand, within Dsui_2419 at 2576.139 kb on + strand, within Dsui_2419 at 2576.364 kb on - strand at 2576.399 kb on - strand, within Dsui_2419 at 2576.479 kb on + strand, within Dsui_2419 at 2576.479 kb on + strand, within Dsui_2419 at 2576.479 kb on + strand, within Dsui_2419 at 2576.563 kb on - strand at 2576.564 kb on + strand, within Dsui_2419 at 2576.660 kb on - strand at 2576.692 kb on - strand, within Dsui_2419 at 2576.710 kb on + strand, within Dsui_2419 at 2576.756 kb on + strand, within Dsui_2419 at 2577.088 kb on + strand, within Dsui_2419 at 2577.169 kb on + strand, within Dsui_2419 at 2577.189 kb on + strand, within Dsui_2419 at 2577.207 kb on + strand, within Dsui_2419 at 2577.328 kb on - strand at 2577.424 kb on + strand at 2577.447 kb on + strand at 2577.450 kb on - strand at 2577.533 kb on + strand at 2577.597 kb on + strand at 2577.646 kb on + strand at 2577.693 kb on + strand at 2577.761 kb on + strand at 2577.809 kb on + strand at 2577.840 kb on - strand at 2577.881 kb on + strand, within Dsui_2420 at 2577.896 kb on + strand, within Dsui_2420 at 2577.906 kb on + strand, within Dsui_2420 at 2577.948 kb on - strand at 2578.185 kb on - strand at 2578.370 kb on + strand, within Dsui_2420 at 2578.370 kb on + strand, within Dsui_2420 at 2578.419 kb on + strand, within Dsui_2420 at 2578.449 kb on + strand, within Dsui_2420
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 2,573,545 + Dsui_2418 0.46 -0.2 2,573,637 + Dsui_2418 0.52 +0.8 2,573,715 - Dsui_2418 0.57 -0.5 2,573,752 + Dsui_2418 0.59 -1.2 2,573,760 - +1.6 2,573,766 + Dsui_2418 0.60 -0.5 2,573,838 + Dsui_2418 0.64 -1.4 2,573,846 - Dsui_2418 0.65 +0.0 2,573,859 + Dsui_2418 0.66 -0.3 2,573,991 + Dsui_2418 0.74 -0.6 2,574,019 + Dsui_2418 0.76 -0.8 2,574,028 + Dsui_2418 0.76 +0.0 2,574,028 + Dsui_2418 0.76 -1.9 2,574,038 + Dsui_2418 0.77 -0.6 2,574,046 - +0.6 2,574,106 + Dsui_2418 0.81 +0.6 2,574,142 + Dsui_2418 0.83 -3.3 2,574,324 + +0.2 2,574,332 - +0.6 2,574,369 - -2.7 2,574,384 + -0.7 2,574,384 + -0.1 2,574,416 - +0.9 2,574,535 + -0.2 2,574,551 + -1.2 2,574,563 - +2.2 2,574,591 + -0.5 2,574,591 + -0.5 2,574,591 + +1.0 2,574,591 + -0.2 2,574,591 + +2.0 2,574,591 + -0.7 2,574,591 + +0.0 2,574,594 - -1.3 2,574,793 + -1.2 2,574,803 + -1.0 2,574,949 - +0.6 2,574,965 - -3.1 2,574,971 - Dsui_2419 0.14 -0.4 2,575,010 - +0.6 2,575,059 + Dsui_2419 0.17 -0.2 2,575,110 + Dsui_2419 0.19 -0.3 2,575,118 - Dsui_2419 0.19 -0.1 2,575,233 + Dsui_2419 0.23 -0.5 2,575,287 + Dsui_2419 0.25 +0.6 2,575,295 - -0.4 2,575,393 + Dsui_2419 0.28 -0.1 2,575,404 + Dsui_2419 0.29 -0.1 2,575,412 - -1.2 2,575,422 - +2.9 2,575,440 - -2.0 2,575,635 - -2.7 2,575,749 + Dsui_2419 0.40 +2.2 2,575,841 + Dsui_2419 0.43 +0.3 2,575,869 - +0.2 2,575,898 - -0.4 2,575,899 + Dsui_2419 0.45 +1.2 2,575,922 + Dsui_2419 0.46 -0.1 2,575,931 - -2.0 2,575,986 + Dsui_2419 0.48 -0.1 2,576,002 - Dsui_2419 0.49 -0.6 2,576,068 - -1.4 2,576,075 + Dsui_2419 0.51 +2.6 2,576,075 + Dsui_2419 0.51 -1.1 2,576,080 + Dsui_2419 0.51 +0.8 2,576,083 - Dsui_2419 0.51 -0.2 2,576,084 - Dsui_2419 0.52 +1.0 2,576,097 + Dsui_2419 0.52 +3.6 2,576,133 - Dsui_2419 0.53 +2.6 2,576,139 + Dsui_2419 0.53 -0.3 2,576,364 - +0.6 2,576,399 - Dsui_2419 0.62 +1.2 2,576,479 + Dsui_2419 0.65 -1.2 2,576,479 + Dsui_2419 0.65 -0.1 2,576,479 + Dsui_2419 0.65 -0.2 2,576,563 - +3.8 2,576,564 + Dsui_2419 0.68 -0.5 2,576,660 - -2.3 2,576,692 - Dsui_2419 0.72 +1.6 2,576,710 + Dsui_2419 0.72 -1.6 2,576,756 + Dsui_2419 0.74 -0.1 2,577,088 + Dsui_2419 0.85 -0.3 2,577,169 + Dsui_2419 0.88 +1.5 2,577,189 + Dsui_2419 0.88 +1.8 2,577,207 + Dsui_2419 0.89 -0.4 2,577,328 - +1.6 2,577,424 + +0.3 2,577,447 + +0.0 2,577,450 - +0.6 2,577,533 + +0.3 2,577,597 + -1.0 2,577,646 + -0.0 2,577,693 + -0.4 2,577,761 + +0.1 2,577,809 + -0.5 2,577,840 - +0.3 2,577,881 + Dsui_2420 0.10 -0.2 2,577,896 + Dsui_2420 0.11 +0.2 2,577,906 + Dsui_2420 0.12 -1.0 2,577,948 - +0.6 2,578,185 - +0.6 2,578,370 + Dsui_2420 0.32 -1.6 2,578,370 + Dsui_2420 0.32 +0.3 2,578,419 + Dsui_2420 0.34 +0.2 2,578,449 + Dsui_2420 0.35 -0.6
Or see this region's nucleotide sequence