Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2115 and Dsui_2116 are separated by 139 nucleotides Dsui_2116 and Dsui_2117 are separated by 160 nucleotides
Dsui_2115: Dsui_2115 - transcriptional regulator, at 2,240,517 to 2,241,470
_2115
Dsui_2116: Dsui_2116 - Fe-dependent oxidoreductase, alcohol dehydrogenase, at 2,241,610 to 2,242,758
_2116
Dsui_2117: Dsui_2117 - acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit, at 2,242,919 to 2,243,785
_2117
Position (kb)
2241
2242
2243 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2240.770 kb on + strand, within Dsui_2115 at 2240.817 kb on - strand, within Dsui_2115 at 2240.829 kb on - strand, within Dsui_2115 at 2240.963 kb on - strand, within Dsui_2115 at 2240.963 kb on - strand, within Dsui_2115 at 2241.200 kb on - strand, within Dsui_2115 at 2241.248 kb on + strand, within Dsui_2115 at 2241.404 kb on + strand at 2241.582 kb on + strand at 2241.592 kb on + strand at 2241.627 kb on + strand at 2241.635 kb on - strand at 2241.635 kb on - strand at 2241.761 kb on - strand at 2241.763 kb on + strand, within Dsui_2116 at 2241.794 kb on - strand at 2241.884 kb on - strand, within Dsui_2116 at 2241.884 kb on - strand, within Dsui_2116 at 2241.905 kb on + strand at 2242.053 kb on + strand at 2242.133 kb on - strand, within Dsui_2116 at 2242.330 kb on + strand, within Dsui_2116 at 2242.377 kb on + strand, within Dsui_2116 at 2242.406 kb on + strand at 2242.532 kb on - strand at 2242.580 kb on - strand at 2242.656 kb on + strand at 2242.668 kb on + strand at 2242.705 kb on + strand at 2242.705 kb on + strand at 2242.758 kb on + strand at 2242.761 kb on - strand at 2242.771 kb on + strand at 2242.781 kb on + strand at 2242.813 kb on - strand at 2242.895 kb on + strand at 2242.973 kb on - strand at 2243.024 kb on - strand at 2243.024 kb on - strand, within Dsui_2117 at 2243.076 kb on - strand at 2243.076 kb on - strand, within Dsui_2117 at 2243.270 kb on - strand, within Dsui_2117 at 2243.331 kb on + strand at 2243.337 kb on - strand at 2243.396 kb on - strand at 2243.396 kb on - strand, within Dsui_2117 at 2243.537 kb on - strand at 2243.712 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 2,240,770 + Dsui_2115 0.27 -0.4 2,240,817 - Dsui_2115 0.31 -1.1 2,240,829 - Dsui_2115 0.33 -0.3 2,240,963 - Dsui_2115 0.47 +0.5 2,240,963 - Dsui_2115 0.47 +0.7 2,241,200 - Dsui_2115 0.72 -2.5 2,241,248 + Dsui_2115 0.77 -1.4 2,241,404 + +0.7 2,241,582 + +1.7 2,241,592 + -0.3 2,241,627 + +2.3 2,241,635 - -2.6 2,241,635 - +0.5 2,241,761 - +0.7 2,241,763 + Dsui_2116 0.13 +0.7 2,241,794 - +1.7 2,241,884 - Dsui_2116 0.24 -0.4 2,241,884 - Dsui_2116 0.24 -1.5 2,241,905 + +0.7 2,242,053 + -2.7 2,242,133 - Dsui_2116 0.46 -0.8 2,242,330 + Dsui_2116 0.63 -2.0 2,242,377 + Dsui_2116 0.67 +0.7 2,242,406 + -1.0 2,242,532 - +0.7 2,242,580 - +0.7 2,242,656 + +0.5 2,242,668 + +3.7 2,242,705 + +0.7 2,242,705 + +0.7 2,242,758 + +0.5 2,242,761 - -0.9 2,242,771 + -1.0 2,242,781 + +0.3 2,242,813 - +4.0 2,242,895 + -0.9 2,242,973 - -0.3 2,243,024 - +0.7 2,243,024 - Dsui_2117 0.12 +2.9 2,243,076 - +0.7 2,243,076 - Dsui_2117 0.18 +2.9 2,243,270 - Dsui_2117 0.40 -0.6 2,243,331 + -0.3 2,243,337 - +0.7 2,243,396 - +0.7 2,243,396 - Dsui_2117 0.55 +3.0 2,243,537 - +0.7 2,243,712 + +3.3
Or see this region's nucleotide sequence