Strain Fitness in Dechlorosoma suillum PS around Dsui_2116

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2115 and Dsui_2116 are separated by 139 nucleotidesDsui_2116 and Dsui_2117 are separated by 160 nucleotides Dsui_2115: Dsui_2115 - transcriptional regulator, at 2,240,517 to 2,241,470 _2115 Dsui_2116: Dsui_2116 - Fe-dependent oxidoreductase, alcohol dehydrogenase, at 2,241,610 to 2,242,758 _2116 Dsui_2117: Dsui_2117 - acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit, at 2,242,919 to 2,243,785 _2117 Position (kb) 2241 2242 2243Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2240.770 kb on + strand, within Dsui_2115at 2240.817 kb on - strand, within Dsui_2115at 2240.829 kb on - strand, within Dsui_2115at 2240.963 kb on - strand, within Dsui_2115at 2240.963 kb on - strand, within Dsui_2115at 2241.200 kb on - strand, within Dsui_2115at 2241.248 kb on + strand, within Dsui_2115at 2241.404 kb on + strandat 2241.582 kb on + strandat 2241.592 kb on + strandat 2241.627 kb on + strandat 2241.635 kb on - strandat 2241.635 kb on - strandat 2241.761 kb on - strandat 2241.763 kb on + strand, within Dsui_2116at 2241.794 kb on - strandat 2241.884 kb on - strand, within Dsui_2116at 2241.884 kb on - strand, within Dsui_2116at 2241.905 kb on + strandat 2242.053 kb on + strandat 2242.133 kb on - strand, within Dsui_2116at 2242.330 kb on + strand, within Dsui_2116at 2242.377 kb on + strand, within Dsui_2116at 2242.406 kb on + strandat 2242.532 kb on - strandat 2242.580 kb on - strandat 2242.656 kb on + strandat 2242.668 kb on + strandat 2242.705 kb on + strandat 2242.705 kb on + strandat 2242.758 kb on + strandat 2242.761 kb on - strandat 2242.771 kb on + strandat 2242.781 kb on + strandat 2242.813 kb on - strandat 2242.895 kb on + strandat 2242.973 kb on - strandat 2243.024 kb on - strandat 2243.024 kb on - strand, within Dsui_2117at 2243.076 kb on - strandat 2243.076 kb on - strand, within Dsui_2117at 2243.270 kb on - strand, within Dsui_2117at 2243.331 kb on + strandat 2243.337 kb on - strandat 2243.396 kb on - strandat 2243.396 kb on - strand, within Dsui_2117at 2243.537 kb on - strandat 2243.712 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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2,240,770 + Dsui_2115 0.27 -0.4
2,240,817 - Dsui_2115 0.31 -1.1
2,240,829 - Dsui_2115 0.33 -0.3
2,240,963 - Dsui_2115 0.47 +0.5
2,240,963 - Dsui_2115 0.47 +0.7
2,241,200 - Dsui_2115 0.72 -2.5
2,241,248 + Dsui_2115 0.77 -1.4
2,241,404 + +0.7
2,241,582 + +1.7
2,241,592 + -0.3
2,241,627 + +2.3
2,241,635 - -2.6
2,241,635 - +0.5
2,241,761 - +0.7
2,241,763 + Dsui_2116 0.13 +0.7
2,241,794 - +1.7
2,241,884 - Dsui_2116 0.24 -0.4
2,241,884 - Dsui_2116 0.24 -1.5
2,241,905 + +0.7
2,242,053 + -2.7
2,242,133 - Dsui_2116 0.46 -0.8
2,242,330 + Dsui_2116 0.63 -2.0
2,242,377 + Dsui_2116 0.67 +0.7
2,242,406 + -1.0
2,242,532 - +0.7
2,242,580 - +0.7
2,242,656 + +0.5
2,242,668 + +3.7
2,242,705 + +0.7
2,242,705 + +0.7
2,242,758 + +0.5
2,242,761 - -0.9
2,242,771 + -1.0
2,242,781 + +0.3
2,242,813 - +4.0
2,242,895 + -0.9
2,242,973 - -0.3
2,243,024 - +0.7
2,243,024 - Dsui_2117 0.12 +2.9
2,243,076 - +0.7
2,243,076 - Dsui_2117 0.18 +2.9
2,243,270 - Dsui_2117 0.40 -0.6
2,243,331 + -0.3
2,243,337 - +0.7
2,243,396 - +0.7
2,243,396 - Dsui_2117 0.55 +3.0
2,243,537 - +0.7
2,243,712 + +3.3

Or see this region's nucleotide sequence