Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2077 and Dsui_2078 are separated by 153 nucleotides Dsui_2078 and Dsui_2079 are separated by 135 nucleotides Dsui_2079 and Dsui_2080 overlap by 4 nucleotides Dsui_2080 and Dsui_2081 are separated by 6 nucleotides
Dsui_2077: Dsui_2077 - cAMP-binding protein, at 2,196,831 to 2,198,312
_2077
Dsui_2078: Dsui_2078 - cytochrome c551/c552, at 2,198,466 to 2,198,774
_2078
Dsui_2079: Dsui_2079 - histidine kinase, at 2,198,910 to 2,200,745
_2079
Dsui_2080: Dsui_2080 - response regulator, at 2,200,742 to 2,201,386
_2080
Dsui_2081: Dsui_2081 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,201,393 to 2,202,961
_2081
Position (kb)
2198
2199
2200
2201 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2197.977 kb on + strand, within Dsui_2077 at 2197.996 kb on + strand, within Dsui_2077 at 2198.054 kb on - strand at 2198.069 kb on - strand at 2198.095 kb on + strand, within Dsui_2077 at 2198.236 kb on - strand at 2198.265 kb on + strand at 2198.316 kb on - strand at 2198.320 kb on + strand at 2198.423 kb on + strand at 2198.426 kb on - strand at 2198.490 kb on - strand at 2198.538 kb on + strand, within Dsui_2078 at 2198.543 kb on + strand, within Dsui_2078 at 2198.543 kb on + strand at 2198.551 kb on - strand, within Dsui_2078 at 2198.567 kb on - strand, within Dsui_2078 at 2198.603 kb on + strand at 2198.624 kb on + strand at 2198.624 kb on + strand, within Dsui_2078 at 2198.624 kb on + strand, within Dsui_2078 at 2198.776 kb on + strand at 2198.986 kb on + strand at 2199.037 kb on + strand at 2199.091 kb on - strand at 2199.172 kb on - strand at 2199.179 kb on + strand at 2199.216 kb on - strand at 2199.447 kb on - strand at 2199.651 kb on - strand at 2199.701 kb on + strand, within Dsui_2079 at 2199.709 kb on - strand, within Dsui_2079 at 2199.755 kb on + strand, within Dsui_2079 at 2199.786 kb on + strand at 2199.922 kb on + strand, within Dsui_2079 at 2199.955 kb on + strand, within Dsui_2079 at 2199.955 kb on + strand, within Dsui_2079 at 2199.967 kb on + strand, within Dsui_2079 at 2200.072 kb on - strand at 2200.303 kb on + strand at 2200.313 kb on + strand, within Dsui_2079 at 2200.495 kb on - strand, within Dsui_2079 at 2200.541 kb on + strand, within Dsui_2079 at 2200.546 kb on + strand at 2200.554 kb on + strand, within Dsui_2079 at 2200.606 kb on + strand at 2200.608 kb on - strand at 2200.681 kb on + strand at 2200.692 kb on + strand at 2200.814 kb on - strand at 2200.827 kb on - strand at 2200.827 kb on - strand, within Dsui_2080 at 2200.841 kb on + strand, within Dsui_2080 at 2200.971 kb on - strand, within Dsui_2080 at 2201.044 kb on + strand, within Dsui_2080 at 2201.081 kb on + strand, within Dsui_2080 at 2201.109 kb on - strand at 2201.228 kb on + strand at 2201.293 kb on - strand, within Dsui_2080 at 2201.687 kb on - strand, within Dsui_2081 at 2201.692 kb on - strand, within Dsui_2081 at 2201.735 kb on - strand, within Dsui_2081
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 2,197,977 + Dsui_2077 0.77 +5.5 2,197,996 + Dsui_2077 0.79 +2.4 2,198,054 - +1.4 2,198,069 - +0.7 2,198,095 + Dsui_2077 0.85 +2.8 2,198,236 - +3.8 2,198,265 + +2.5 2,198,316 - +0.7 2,198,320 + +0.7 2,198,423 + -0.6 2,198,426 - +0.7 2,198,490 - -1.3 2,198,538 + Dsui_2078 0.23 +1.0 2,198,543 + Dsui_2078 0.25 -1.6 2,198,543 + -2.3 2,198,551 - Dsui_2078 0.28 -1.3 2,198,567 - Dsui_2078 0.33 -0.7 2,198,603 + +0.7 2,198,624 + +0.4 2,198,624 + Dsui_2078 0.51 -0.5 2,198,624 + Dsui_2078 0.51 +0.2 2,198,776 + -0.5 2,198,986 + -3.7 2,199,037 + +0.7 2,199,091 - -0.6 2,199,172 - +1.7 2,199,179 + -0.1 2,199,216 - +4.2 2,199,447 - +0.7 2,199,651 - +0.7 2,199,701 + Dsui_2079 0.43 +1.4 2,199,709 - Dsui_2079 0.44 -0.2 2,199,755 + Dsui_2079 0.46 +1.7 2,199,786 + +0.7 2,199,922 + Dsui_2079 0.55 -0.5 2,199,955 + Dsui_2079 0.57 -0.1 2,199,955 + Dsui_2079 0.57 -1.8 2,199,967 + Dsui_2079 0.58 +0.2 2,200,072 - +0.2 2,200,303 + +0.3 2,200,313 + Dsui_2079 0.76 -0.9 2,200,495 - Dsui_2079 0.86 -0.0 2,200,541 + Dsui_2079 0.89 -0.5 2,200,546 + -1.6 2,200,554 + Dsui_2079 0.90 +0.3 2,200,606 + -0.5 2,200,608 - -1.3 2,200,681 + +3.3 2,200,692 + -0.9 2,200,814 - +1.7 2,200,827 - +1.5 2,200,827 - Dsui_2080 0.13 -0.7 2,200,841 + Dsui_2080 0.15 -0.7 2,200,971 - Dsui_2080 0.36 +0.4 2,201,044 + Dsui_2080 0.47 -0.5 2,201,081 + Dsui_2080 0.53 -0.7 2,201,109 - -2.6 2,201,228 + +0.3 2,201,293 - Dsui_2080 0.85 +0.7 2,201,687 - Dsui_2081 0.19 +1.3 2,201,692 - Dsui_2081 0.19 -0.5 2,201,735 - Dsui_2081 0.22 -0.4
Or see this region's nucleotide sequence