Strain Fitness in Dechlorosoma suillum PS around Dsui_1994

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1993 and Dsui_1994 are separated by 19 nucleotidesDsui_1994 and Dsui_1995 are separated by 186 nucleotides Dsui_1993: Dsui_1993 - replicative DNA helicase, at 2,100,215 to 2,101,696 _1993 Dsui_1994: Dsui_1994 - NADPH-dependent FMN reductase, at 2,101,716 to 2,102,207 _1994 Dsui_1995: Dsui_1995 - transglutaminase-like enzyme, predicted cysteine protease, at 2,102,394 to 2,103,605 _1995 Position (kb) 2101 2102 2103Strain fitness (log2 ratio) -1 0 1 2 3 4at 2101.750 kb on - strandat 2101.845 kb on - strand, within Dsui_1994at 2101.864 kb on - strandat 2101.950 kb on + strand, within Dsui_1994at 2102.163 kb on - strandat 2102.261 kb on - strandat 2102.923 kb on + strandat 2102.935 kb on - strand, within Dsui_1995at 2102.942 kb on - strand, within Dsui_1995at 2102.945 kb on + strand, within Dsui_1995at 2102.965 kb on + strand, within Dsui_1995at 2103.091 kb on + strandat 2103.178 kb on - strand, within Dsui_1995at 2103.180 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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2,101,750 - -1.6
2,101,845 - Dsui_1994 0.26 +0.5
2,101,864 - +0.8
2,101,950 + Dsui_1994 0.48 -1.5
2,102,163 - +3.8
2,102,261 - +0.3
2,102,923 + -1.2
2,102,935 - Dsui_1995 0.45 -0.2
2,102,942 - Dsui_1995 0.45 +0.5
2,102,945 + Dsui_1995 0.45 -0.5
2,102,965 + Dsui_1995 0.47 -0.7
2,103,091 + +0.8
2,103,178 - Dsui_1995 0.65 +0.1
2,103,180 + +0.5

Or see this region's nucleotide sequence