Strain Fitness in Dechlorosoma suillum PS around Dsui_1782

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1781 and Dsui_1782 are separated by 36 nucleotidesDsui_1782 and Dsui_1783 are separated by 89 nucleotides Dsui_1781: Dsui_1781 - flagellar capping protein, at 1,871,205 to 1,872,542 _1781 Dsui_1782: Dsui_1782 - flagellar protein FlaG, at 1,872,579 to 1,872,980 _1782 Dsui_1783: Dsui_1783 - flagellin/flagellar hook associated protein, at 1,873,070 to 1,873,924 _1783 Position (kb) 1872 1873Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1871.627 kb on + strandat 1871.646 kb on - strand, within Dsui_1781at 1871.659 kb on - strand, within Dsui_1781at 1871.665 kb on + strand, within Dsui_1781at 1871.665 kb on + strand, within Dsui_1781at 1871.666 kb on - strand, within Dsui_1781at 1871.667 kb on - strand, within Dsui_1781at 1871.667 kb on - strand, within Dsui_1781at 1871.675 kb on - strand, within Dsui_1781at 1871.682 kb on + strand, within Dsui_1781at 1871.689 kb on + strand, within Dsui_1781at 1871.697 kb on - strand, within Dsui_1781at 1871.703 kb on + strand, within Dsui_1781at 1871.713 kb on + strand, within Dsui_1781at 1871.721 kb on - strand, within Dsui_1781at 1871.761 kb on + strandat 1871.769 kb on - strand, within Dsui_1781at 1871.796 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strandat 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strandat 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strandat 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strandat 1871.801 kb on + strandat 1871.801 kb on + strand, within Dsui_1781at 1871.801 kb on + strandat 1871.804 kb on - strand, within Dsui_1781at 1871.807 kb on + strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.809 kb on - strand, within Dsui_1781at 1871.812 kb on + strand, within Dsui_1781at 1871.855 kb on - strand, within Dsui_1781at 1871.862 kb on - strand, within Dsui_1781at 1871.871 kb on - strand, within Dsui_1781at 1871.876 kb on + strand, within Dsui_1781at 1871.876 kb on + strand, within Dsui_1781at 1871.884 kb on - strand, within Dsui_1781at 1871.903 kb on + strandat 1871.903 kb on + strand, within Dsui_1781at 1871.903 kb on + strand, within Dsui_1781at 1871.908 kb on + strand, within Dsui_1781at 1871.911 kb on - strand, within Dsui_1781at 1871.963 kb on - strand, within Dsui_1781at 1871.963 kb on - strand, within Dsui_1781at 1871.963 kb on - strand, within Dsui_1781at 1871.987 kb on + strand, within Dsui_1781at 1871.999 kb on + strand, within Dsui_1781at 1872.055 kb on - strand, within Dsui_1781at 1872.111 kb on - strand, within Dsui_1781at 1872.176 kb on - strand, within Dsui_1781at 1872.201 kb on + strand, within Dsui_1781at 1872.229 kb on + strand, within Dsui_1781at 1872.271 kb on - strand, within Dsui_1781at 1872.307 kb on - strand, within Dsui_1781at 1872.322 kb on + strand, within Dsui_1781at 1872.339 kb on + strand, within Dsui_1781at 1872.364 kb on - strand, within Dsui_1781at 1872.391 kb on + strand, within Dsui_1781at 1872.391 kb on + strand, within Dsui_1781at 1872.417 kb on - strandat 1872.422 kb on - strandat 1872.466 kb on + strandat 1872.472 kb on + strandat 1872.472 kb on + strandat 1872.493 kb on + strandat 1872.512 kb on - strandat 1872.516 kb on + strandat 1872.517 kb on - strandat 1872.524 kb on - strandat 1872.594 kb on - strandat 1872.597 kb on + strandat 1872.597 kb on - strandat 1872.603 kb on + strandat 1872.614 kb on + strandat 1872.693 kb on - strand, within Dsui_1782at 1872.700 kb on - strand, within Dsui_1782at 1872.703 kb on + strand, within Dsui_1782at 1872.711 kb on - strand, within Dsui_1782at 1872.720 kb on - strand, within Dsui_1782at 1872.744 kb on + strand, within Dsui_1782at 1872.767 kb on - strand, within Dsui_1782at 1872.778 kb on + strand, within Dsui_1782at 1872.781 kb on + strand, within Dsui_1782at 1872.781 kb on + strand, within Dsui_1782at 1872.781 kb on + strand, within Dsui_1782at 1872.870 kb on - strand, within Dsui_1782at 1872.888 kb on + strandat 1872.936 kb on - strand, within Dsui_1782at 1872.950 kb on + strandat 1872.960 kb on + strandat 1872.968 kb on - strandat 1872.997 kb on - strandat 1872.997 kb on - strandat 1873.005 kb on - strandat 1873.076 kb on - strandat 1873.076 kb on - strandat 1873.076 kb on - strandat 1873.076 kb on - strandat 1873.081 kb on - strandat 1873.092 kb on + strandat 1873.100 kb on - strandat 1873.100 kb on - strandat 1873.104 kb on + strandat 1873.104 kb on + strandat 1873.104 kb on + strandat 1873.104 kb on + strandat 1873.112 kb on - strandat 1873.112 kb on - strandat 1873.158 kb on - strand, within Dsui_1783at 1873.163 kb on - strand, within Dsui_1783at 1873.210 kb on - strand, within Dsui_1783at 1873.240 kb on - strand, within Dsui_1783at 1873.249 kb on - strand, within Dsui_1783at 1873.265 kb on + strand, within Dsui_1783at 1873.301 kb on + strand, within Dsui_1783at 1873.336 kb on + strand, within Dsui_1783at 1873.336 kb on - strand, within Dsui_1783at 1873.403 kb on + strand, within Dsui_1783at 1873.421 kb on + strand, within Dsui_1783at 1873.424 kb on - strand, within Dsui_1783at 1873.432 kb on + strand, within Dsui_1783at 1873.440 kb on - strand, within Dsui_1783at 1873.440 kb on - strand, within Dsui_1783at 1873.457 kb on + strand, within Dsui_1783at 1873.491 kb on - strand, within Dsui_1783at 1873.608 kb on - strand, within Dsui_1783at 1873.628 kb on + strand, within Dsui_1783at 1873.675 kb on + strand, within Dsui_1783at 1873.675 kb on + strand, within Dsui_1783at 1873.755 kb on + strand, within Dsui_1783at 1873.760 kb on + strand, within Dsui_1783at 1873.760 kb on + strand, within Dsui_1783at 1873.768 kb on - strand, within Dsui_1783at 1873.768 kb on - strand, within Dsui_1783at 1873.768 kb on - strand, within Dsui_1783at 1873.786 kb on - strand, within Dsui_1783at 1873.791 kb on + strand, within Dsui_1783at 1873.791 kb on + strand, within Dsui_1783at 1873.791 kb on + strand, within Dsui_1783at 1873.798 kb on + strand, within Dsui_1783at 1873.799 kb on - strand, within Dsui_1783at 1873.806 kb on - strand, within Dsui_1783at 1873.808 kb on + strand, within Dsui_1783at 1873.808 kb on + strand, within Dsui_1783at 1873.811 kb on - strand, within Dsui_1783at 1873.811 kb on - strand, within Dsui_1783at 1873.816 kb on - strand, within Dsui_1783at 1873.819 kb on + strand, within Dsui_1783at 1873.819 kb on + strand, within Dsui_1783at 1873.819 kb on + strand, within Dsui_1783at 1873.821 kb on + strand, within Dsui_1783at 1873.821 kb on + strand, within Dsui_1783at 1873.827 kb on - strand, within Dsui_1783at 1873.827 kb on - strand, within Dsui_1783at 1873.827 kb on - strand, within Dsui_1783at 1873.829 kb on - strand, within Dsui_1783at 1873.829 kb on - strand, within Dsui_1783at 1873.840 kb on - strandat 1873.842 kb on + strandat 1873.842 kb on + strandat 1873.850 kb on - strandat 1873.858 kb on + strandat 1873.858 kb on + strandat 1873.858 kb on + strandat 1873.866 kb on - strandat 1873.866 kb on - strandat 1873.874 kb on + strandat 1873.901 kb on - strandat 1873.921 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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1,871,627 + +0.8
1,871,646 - Dsui_1781 0.33 -0.8
1,871,659 - Dsui_1781 0.34 -0.3
1,871,665 + Dsui_1781 0.34 +0.5
1,871,665 + Dsui_1781 0.34 -0.7
1,871,666 - Dsui_1781 0.34 -0.8
1,871,667 - Dsui_1781 0.35 +3.1
1,871,667 - Dsui_1781 0.35 -0.4
1,871,675 - Dsui_1781 0.35 +0.2
1,871,682 + Dsui_1781 0.36 +0.8
1,871,689 + Dsui_1781 0.36 +2.8
1,871,697 - Dsui_1781 0.37 +0.1
1,871,703 + Dsui_1781 0.37 -1.5
1,871,713 + Dsui_1781 0.38 -0.8
1,871,721 - Dsui_1781 0.39 -0.5
1,871,761 + +2.3
1,871,769 - Dsui_1781 0.42 -0.7
1,871,796 + Dsui_1781 0.44 +0.8
1,871,801 + Dsui_1781 0.45 -0.4
1,871,801 + Dsui_1781 0.45 +0.4
1,871,801 + +0.8
1,871,801 + Dsui_1781 0.45 +0.5
1,871,801 + Dsui_1781 0.45 +0.8
1,871,801 + Dsui_1781 0.45 -0.2
1,871,801 + Dsui_1781 0.45 +0.8
1,871,801 + Dsui_1781 0.45 +1.2
1,871,801 + -2.0
1,871,801 + Dsui_1781 0.45 +0.8
1,871,801 + Dsui_1781 0.45 +3.1
1,871,801 + Dsui_1781 0.45 +1.2
1,871,801 + Dsui_1781 0.45 +0.8
1,871,801 + Dsui_1781 0.45 +1.8
1,871,801 + Dsui_1781 0.45 -0.8
1,871,801 + Dsui_1781 0.45 -0.2
1,871,801 + +0.8
1,871,801 + Dsui_1781 0.45 +2.3
1,871,801 + Dsui_1781 0.45 +2.6
1,871,801 + Dsui_1781 0.45 -0.2
1,871,801 + Dsui_1781 0.45 +1.5
1,871,801 + Dsui_1781 0.45 +0.5
1,871,801 + +1.1
1,871,801 + +0.8
1,871,801 + Dsui_1781 0.45 +0.2
1,871,801 + +0.8
1,871,804 - Dsui_1781 0.45 -1.0
1,871,807 + Dsui_1781 0.45 -2.3
1,871,809 - Dsui_1781 0.45 -0.6
1,871,809 - Dsui_1781 0.45 +0.8
1,871,809 - Dsui_1781 0.45 +1.1
1,871,809 - Dsui_1781 0.45 -0.6
1,871,809 - Dsui_1781 0.45 -0.1
1,871,809 - Dsui_1781 0.45 +3.8
1,871,809 - Dsui_1781 0.45 -0.7
1,871,809 - Dsui_1781 0.45 -0.6
1,871,809 - Dsui_1781 0.45 -1.6
1,871,809 - Dsui_1781 0.45 -0.2
1,871,809 - Dsui_1781 0.45 +0.7
1,871,809 - Dsui_1781 0.45 +0.2
1,871,809 - Dsui_1781 0.45 +0.0
1,871,809 - Dsui_1781 0.45 +0.9
1,871,809 - Dsui_1781 0.45 +0.5
1,871,809 - Dsui_1781 0.45 +1.8
1,871,809 - Dsui_1781 0.45 +1.1
1,871,809 - Dsui_1781 0.45 +0.2
1,871,809 - Dsui_1781 0.45 +0.8
1,871,809 - Dsui_1781 0.45 -1.1
1,871,809 - Dsui_1781 0.45 +1.8
1,871,809 - Dsui_1781 0.45 +0.8
1,871,809 - Dsui_1781 0.45 -0.5
1,871,809 - Dsui_1781 0.45 +0.8
1,871,812 + Dsui_1781 0.45 +2.3
1,871,855 - Dsui_1781 0.49 +1.3
1,871,862 - Dsui_1781 0.49 -1.2
1,871,871 - Dsui_1781 0.50 -0.5
1,871,876 + Dsui_1781 0.50 -2.0
1,871,876 + Dsui_1781 0.50 +0.8
1,871,884 - Dsui_1781 0.51 -0.7
1,871,903 + +2.8
1,871,903 + Dsui_1781 0.52 +0.2
1,871,903 + Dsui_1781 0.52 +1.0
1,871,908 + Dsui_1781 0.53 +2.1
1,871,911 - Dsui_1781 0.53 +0.8
1,871,963 - Dsui_1781 0.57 -0.1
1,871,963 - Dsui_1781 0.57 -1.1
1,871,963 - Dsui_1781 0.57 -0.4
1,871,987 + Dsui_1781 0.58 +0.5
1,871,999 + Dsui_1781 0.59 -0.6
1,872,055 - Dsui_1781 0.64 -3.0
1,872,111 - Dsui_1781 0.68 +1.0
1,872,176 - Dsui_1781 0.73 -0.7
1,872,201 + Dsui_1781 0.74 -0.6
1,872,229 + Dsui_1781 0.77 -2.2
1,872,271 - Dsui_1781 0.80 -0.0
1,872,307 - Dsui_1781 0.82 -0.9
1,872,322 + Dsui_1781 0.83 -0.1
1,872,339 + Dsui_1781 0.85 -0.8
1,872,364 - Dsui_1781 0.87 -0.8
1,872,391 + Dsui_1781 0.89 -0.4
1,872,391 + Dsui_1781 0.89 -0.2
1,872,417 - -0.5
1,872,422 - +0.1
1,872,466 + -1.5
1,872,472 + +0.8
1,872,472 + -0.7
1,872,493 + +2.3
1,872,512 - -0.3
1,872,516 + -0.7
1,872,517 - -0.8
1,872,524 - -1.0
1,872,594 - -0.3
1,872,597 + +3.3
1,872,597 - -1.0
1,872,603 + -0.9
1,872,614 + -1.2
1,872,693 - Dsui_1782 0.28 -0.2
1,872,700 - Dsui_1782 0.30 +2.8
1,872,703 + Dsui_1782 0.31 +0.8
1,872,711 - Dsui_1782 0.33 -1.8
1,872,720 - Dsui_1782 0.35 -0.7
1,872,744 + Dsui_1782 0.41 -0.6
1,872,767 - Dsui_1782 0.47 -0.5
1,872,778 + Dsui_1782 0.50 -1.8
1,872,781 + Dsui_1782 0.50 +1.8
1,872,781 + Dsui_1782 0.50 -2.3
1,872,781 + Dsui_1782 0.50 -1.1
1,872,870 - Dsui_1782 0.72 -2.4
1,872,888 + +0.8
1,872,936 - Dsui_1782 0.89 +0.3
1,872,950 + +0.8
1,872,960 + -0.6
1,872,968 - -2.4
1,872,997 - +0.8
1,872,997 - -1.0
1,873,005 - +1.0
1,873,076 - +0.1
1,873,076 - -0.0
1,873,076 - -1.0
1,873,076 - -0.2
1,873,081 - -0.4
1,873,092 + +0.0
1,873,100 - +0.8
1,873,100 - -1.2
1,873,104 + -0.6
1,873,104 + -1.0
1,873,104 + -0.1
1,873,104 + -1.2
1,873,112 - -0.7
1,873,112 - +1.3
1,873,158 - Dsui_1783 0.10 -0.1
1,873,163 - Dsui_1783 0.11 -0.8
1,873,210 - Dsui_1783 0.16 -0.1
1,873,240 - Dsui_1783 0.20 -0.2
1,873,249 - Dsui_1783 0.21 -0.7
1,873,265 + Dsui_1783 0.23 -0.3
1,873,301 + Dsui_1783 0.27 +0.1
1,873,336 + Dsui_1783 0.31 +1.9
1,873,336 - Dsui_1783 0.31 -0.9
1,873,403 + Dsui_1783 0.39 +1.2
1,873,421 + Dsui_1783 0.41 +0.8
1,873,424 - Dsui_1783 0.41 -0.1
1,873,432 + Dsui_1783 0.42 -0.4
1,873,440 - Dsui_1783 0.43 +0.9
1,873,440 - Dsui_1783 0.43 -0.1
1,873,457 + Dsui_1783 0.45 +0.6
1,873,491 - Dsui_1783 0.49 +0.3
1,873,608 - Dsui_1783 0.63 -0.3
1,873,628 + Dsui_1783 0.65 +0.8
1,873,675 + Dsui_1783 0.71 -1.8
1,873,675 + Dsui_1783 0.71 +0.8
1,873,755 + Dsui_1783 0.80 -0.2
1,873,760 + Dsui_1783 0.81 -0.2
1,873,760 + Dsui_1783 0.81 +1.2
1,873,768 - Dsui_1783 0.82 -1.4
1,873,768 - Dsui_1783 0.82 +1.0
1,873,768 - Dsui_1783 0.82 -0.6
1,873,786 - Dsui_1783 0.84 -0.7
1,873,791 + Dsui_1783 0.84 -0.2
1,873,791 + Dsui_1783 0.84 +1.8
1,873,791 + Dsui_1783 0.84 +1.5
1,873,798 + Dsui_1783 0.85 +1.2
1,873,799 - Dsui_1783 0.85 -0.4
1,873,806 - Dsui_1783 0.86 -1.3
1,873,808 + Dsui_1783 0.86 -0.8
1,873,808 + Dsui_1783 0.86 -1.4
1,873,811 - Dsui_1783 0.87 -0.1
1,873,811 - Dsui_1783 0.87 +1.1
1,873,816 - Dsui_1783 0.87 +0.9
1,873,819 + Dsui_1783 0.88 +0.5
1,873,819 + Dsui_1783 0.88 -1.9
1,873,819 + Dsui_1783 0.88 -0.2
1,873,821 + Dsui_1783 0.88 -0.2
1,873,821 + Dsui_1783 0.88 -0.5
1,873,827 - Dsui_1783 0.89 +4.6
1,873,827 - Dsui_1783 0.89 +0.9
1,873,827 - Dsui_1783 0.89 +0.6
1,873,829 - Dsui_1783 0.89 -0.8
1,873,829 - Dsui_1783 0.89 -1.0
1,873,840 - -0.5
1,873,842 + +2.0
1,873,842 + -2.6
1,873,850 - +0.3
1,873,858 + -0.1
1,873,858 + +1.8
1,873,858 + +0.8
1,873,866 - -0.1
1,873,866 - -0.0
1,873,874 + +0.1
1,873,901 - +0.3
1,873,921 - -0.1

Or see this region's nucleotide sequence