Experiment: Anaerobic, acetate donor; nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1753 and Dsui_1754 are separated by 15 nucleotides Dsui_1754 and Dsui_1755 are separated by 24 nucleotides
Dsui_1753: Dsui_1753 - flagellar protein export ATPase FliI, at 1,839,183 to 1,840,598
_1753
Dsui_1754: Dsui_1754 - flagellar biosynthesis/type III secretory pathway protein, at 1,840,614 to 1,841,297
_1754
Dsui_1755: Dsui_1755 - flagellar motor switch protein FliG, at 1,841,322 to 1,842,323
_1755
Position (kb)
1840
1841
1842 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1839.760 kb on + strand, within Dsui_1753 at 1839.938 kb on - strand, within Dsui_1753 at 1839.973 kb on + strand, within Dsui_1753 at 1840.026 kb on + strand, within Dsui_1753 at 1840.178 kb on - strand, within Dsui_1753 at 1840.211 kb on + strand, within Dsui_1753 at 1840.232 kb on + strand at 1840.324 kb on + strand, within Dsui_1753 at 1840.480 kb on + strand at 1840.520 kb on + strand at 1840.525 kb on - strand at 1840.582 kb on - strand at 1840.598 kb on + strand at 1840.601 kb on - strand at 1840.601 kb on - strand at 1840.601 kb on - strand at 1840.862 kb on + strand, within Dsui_1754 at 1840.870 kb on - strand, within Dsui_1754 at 1841.006 kb on + strand at 1841.029 kb on + strand, within Dsui_1754 at 1841.089 kb on + strand, within Dsui_1754 at 1841.095 kb on + strand, within Dsui_1754 at 1841.139 kb on - strand, within Dsui_1754 at 1841.169 kb on - strand, within Dsui_1754 at 1841.227 kb on - strand, within Dsui_1754 at 1841.243 kb on + strand at 1841.333 kb on - strand at 1841.389 kb on + strand at 1841.439 kb on + strand, within Dsui_1755 at 1841.446 kb on + strand, within Dsui_1755 at 1841.454 kb on - strand, within Dsui_1755 at 1841.454 kb on - strand, within Dsui_1755 at 1841.548 kb on - strand, within Dsui_1755 at 1841.645 kb on - strand, within Dsui_1755 at 1841.647 kb on - strand, within Dsui_1755 at 1841.727 kb on + strand, within Dsui_1755 at 1841.828 kb on + strand, within Dsui_1755 at 1841.860 kb on + strand, within Dsui_1755 at 1841.916 kb on - strand, within Dsui_1755 at 1842.089 kb on + strand, within Dsui_1755 at 1842.149 kb on + strand, within Dsui_1755 at 1842.174 kb on - strand, within Dsui_1755 at 1842.204 kb on - strand, within Dsui_1755 at 1842.221 kb on + strand, within Dsui_1755 at 1842.224 kb on + strand at 1842.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor remove 1,839,760 + Dsui_1753 0.41 +0.1 1,839,938 - Dsui_1753 0.53 -0.8 1,839,973 + Dsui_1753 0.56 +1.5 1,840,026 + Dsui_1753 0.60 -0.5 1,840,178 - Dsui_1753 0.70 +0.3 1,840,211 + Dsui_1753 0.73 +1.1 1,840,232 + +1.0 1,840,324 + Dsui_1753 0.81 +1.4 1,840,480 + +0.4 1,840,520 + +0.4 1,840,525 - +0.2 1,840,582 - -0.3 1,840,598 + +1.8 1,840,601 - -0.6 1,840,601 - -0.1 1,840,601 - +3.2 1,840,862 + Dsui_1754 0.36 -0.6 1,840,870 - Dsui_1754 0.37 +0.1 1,841,006 + +0.6 1,841,029 + Dsui_1754 0.61 +0.5 1,841,089 + Dsui_1754 0.69 +0.1 1,841,095 + Dsui_1754 0.70 +2.1 1,841,139 - Dsui_1754 0.77 +0.8 1,841,169 - Dsui_1754 0.81 +0.9 1,841,227 - Dsui_1754 0.90 -0.6 1,841,243 + +2.0 1,841,333 - +0.2 1,841,389 + -0.1 1,841,439 + Dsui_1755 0.12 -1.0 1,841,446 + Dsui_1755 0.12 -0.1 1,841,454 - Dsui_1755 0.13 +0.7 1,841,454 - Dsui_1755 0.13 +0.6 1,841,548 - Dsui_1755 0.23 +0.0 1,841,645 - Dsui_1755 0.32 -0.4 1,841,647 - Dsui_1755 0.32 +0.7 1,841,727 + Dsui_1755 0.40 +0.1 1,841,828 + Dsui_1755 0.50 +0.5 1,841,860 + Dsui_1755 0.54 +0.4 1,841,916 - Dsui_1755 0.59 +0.7 1,842,089 + Dsui_1755 0.77 +0.1 1,842,149 + Dsui_1755 0.83 -0.2 1,842,174 - Dsui_1755 0.85 +0.3 1,842,204 - Dsui_1755 0.88 -0.1 1,842,221 + Dsui_1755 0.90 -0.4 1,842,224 + +0.8 1,842,291 + +0.6
Or see this region's nucleotide sequence