Strain Fitness in Dechlorosoma suillum PS around Dsui_1646

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1644 and Dsui_1645 are separated by 10 nucleotidesDsui_1645 and Dsui_1646 are separated by 96 nucleotidesDsui_1646 and Dsui_1647 are separated by 151 nucleotides Dsui_1644: Dsui_1644 - hypothetical protein, at 1,726,387 to 1,726,773 _1644 Dsui_1645: Dsui_1645 - hemerythrin HHE cation binding domain-containing protein, at 1,726,784 to 1,727,362 _1645 Dsui_1646: Dsui_1646 - cAMP-binding protein, at 1,727,459 to 1,728,205 _1646 Dsui_1647: Dsui_1647 - oxygen-independent coproporphyrinogen III oxidase, at 1,728,357 to 1,729,754 _1647 Position (kb) 1727 1728 1729Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1726.547 kb on - strand, within Dsui_1644at 1726.598 kb on - strand, within Dsui_1644at 1726.609 kb on + strand, within Dsui_1644at 1726.665 kb on + strand, within Dsui_1644at 1726.699 kb on + strand, within Dsui_1644at 1726.740 kb on - strandat 1726.796 kb on - strandat 1726.898 kb on - strand, within Dsui_1645at 1726.946 kb on - strand, within Dsui_1645at 1727.089 kb on + strand, within Dsui_1645at 1727.114 kb on + strand, within Dsui_1645at 1727.151 kb on - strand, within Dsui_1645at 1727.186 kb on + strand, within Dsui_1645at 1727.357 kb on + strandat 1727.357 kb on + strandat 1727.357 kb on + strandat 1727.374 kb on + strandat 1727.374 kb on + strandat 1727.382 kb on - strandat 1727.382 kb on - strandat 1727.382 kb on - strandat 1727.382 kb on - strandat 1727.382 kb on - strandat 1727.382 kb on - strandat 1727.387 kb on - strandat 1727.419 kb on + strandat 1727.422 kb on + strandat 1727.467 kb on + strandat 1727.467 kb on + strandat 1727.471 kb on - strandat 1727.475 kb on + strandat 1727.619 kb on + strandat 1727.629 kb on + strand, within Dsui_1646at 1727.726 kb on - strand, within Dsui_1646at 1727.737 kb on - strand, within Dsui_1646at 1727.924 kb on - strand, within Dsui_1646at 1727.981 kb on - strand, within Dsui_1646at 1728.005 kb on - strand, within Dsui_1646at 1728.027 kb on + strand, within Dsui_1646at 1728.096 kb on + strand, within Dsui_1646at 1728.228 kb on - strandat 1728.235 kb on + strandat 1728.239 kb on + strandat 1728.271 kb on + strandat 1728.322 kb on + strandat 1728.489 kb on - strandat 1728.542 kb on + strand, within Dsui_1647at 1728.557 kb on + strand, within Dsui_1647at 1728.557 kb on + strand, within Dsui_1647at 1728.647 kb on + strand, within Dsui_1647at 1728.796 kb on + strand, within Dsui_1647at 1728.844 kb on + strand, within Dsui_1647at 1728.852 kb on - strandat 1728.867 kb on + strand, within Dsui_1647at 1728.873 kb on + strand, within Dsui_1647at 1729.072 kb on - strandat 1729.085 kb on + strand, within Dsui_1647

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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1,726,547 - Dsui_1644 0.41 +0.6
1,726,598 - Dsui_1644 0.55 -0.7
1,726,609 + Dsui_1644 0.57 -0.5
1,726,665 + Dsui_1644 0.72 -1.0
1,726,699 + Dsui_1644 0.81 -0.1
1,726,740 - -0.4
1,726,796 - -1.3
1,726,898 - Dsui_1645 0.20 -1.1
1,726,946 - Dsui_1645 0.28 +1.4
1,727,089 + Dsui_1645 0.53 +0.6
1,727,114 + Dsui_1645 0.57 +1.9
1,727,151 - Dsui_1645 0.63 -0.4
1,727,186 + Dsui_1645 0.69 +1.8
1,727,357 + +0.3
1,727,357 + -0.1
1,727,357 + +0.6
1,727,374 + -1.0
1,727,374 + -1.3
1,727,382 - -0.4
1,727,382 - +2.3
1,727,382 - -0.3
1,727,382 - -2.7
1,727,382 - +0.1
1,727,382 - +0.8
1,727,387 - +0.9
1,727,419 + -0.5
1,727,422 + -0.5
1,727,467 + +3.6
1,727,467 + +0.8
1,727,471 - +1.0
1,727,475 + -0.3
1,727,619 + +0.8
1,727,629 + Dsui_1646 0.23 +0.6
1,727,726 - Dsui_1646 0.36 +1.1
1,727,737 - Dsui_1646 0.37 -0.5
1,727,924 - Dsui_1646 0.62 -0.7
1,727,981 - Dsui_1646 0.70 +2.8
1,728,005 - Dsui_1646 0.73 -2.5
1,728,027 + Dsui_1646 0.76 +0.8
1,728,096 + Dsui_1646 0.85 +0.6
1,728,228 - -0.0
1,728,235 + +1.5
1,728,239 + -1.2
1,728,271 + +1.4
1,728,322 + -1.8
1,728,489 - -3.2
1,728,542 + Dsui_1647 0.13 -2.1
1,728,557 + Dsui_1647 0.14 -3.1
1,728,557 + Dsui_1647 0.14 -5.3
1,728,647 + Dsui_1647 0.21 -4.2
1,728,796 + Dsui_1647 0.31 -3.8
1,728,844 + Dsui_1647 0.35 -3.3
1,728,852 - -2.5
1,728,867 + Dsui_1647 0.36 -3.5
1,728,873 + Dsui_1647 0.37 -3.5
1,729,072 - +0.8
1,729,085 + Dsui_1647 0.52 -0.2

Or see this region's nucleotide sequence