Strain Fitness in Dechlorosoma suillum PS around Dsui_1434

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1432 and Dsui_1433 are separated by 8 nucleotidesDsui_1433 and Dsui_1434 overlap by 1 nucleotidesDsui_1434 and Dsui_1435 overlap by 1 nucleotidesDsui_1435 and Dsui_1436 are separated by 12 nucleotides Dsui_1432: Dsui_1432 - chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 1,486,202 to 1,487,329 _1432 Dsui_1433: Dsui_1433 - chemotaxis protein, at 1,487,338 to 1,487,835 _1433 Dsui_1434: Dsui_1434 - methylase of chemotaxis methyl-accepting protein, at 1,487,835 to 1,488,647 _1434 Dsui_1435: Dsui_1435 - chemotaxis signal transduction protein, at 1,488,647 to 1,489,204 _1435 Dsui_1436: Dsui_1436 - methyl-accepting chemotaxis protein, at 1,489,217 to 1,490,839 _1436 Position (kb) 1487 1488 1489Strain fitness (log2 ratio) -2 -1 0 1 2at 1487.035 kb on + strand, within Dsui_1432at 1487.077 kb on + strand, within Dsui_1432at 1487.077 kb on + strand, within Dsui_1432at 1487.120 kb on - strand, within Dsui_1432at 1487.194 kb on - strand, within Dsui_1432at 1487.216 kb on - strand, within Dsui_1432at 1487.226 kb on - strandat 1487.350 kb on + strandat 1487.423 kb on + strand, within Dsui_1433at 1487.431 kb on + strand, within Dsui_1433at 1487.866 kb on + strandat 1487.874 kb on - strandat 1487.888 kb on + strandat 1487.988 kb on + strand, within Dsui_1434at 1487.988 kb on + strand, within Dsui_1434at 1487.991 kb on - strand, within Dsui_1434at 1488.030 kb on - strand, within Dsui_1434at 1488.207 kb on - strand, within Dsui_1434at 1488.286 kb on + strand, within Dsui_1434at 1488.286 kb on + strand, within Dsui_1434at 1488.673 kb on - strandat 1488.724 kb on + strand, within Dsui_1435at 1488.863 kb on + strand, within Dsui_1435at 1488.863 kb on + strand, within Dsui_1435at 1488.871 kb on - strand, within Dsui_1435at 1488.909 kb on + strand, within Dsui_1435at 1489.127 kb on + strand, within Dsui_1435at 1489.205 kb on + strandat 1489.317 kb on + strandat 1489.441 kb on + strand, within Dsui_1436at 1489.481 kb on - strand, within Dsui_1436at 1489.509 kb on - strand, within Dsui_1436at 1489.509 kb on - strand, within Dsui_1436

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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1,487,035 + Dsui_1432 0.74 +1.2
1,487,077 + Dsui_1432 0.78 +0.0
1,487,077 + Dsui_1432 0.78 -0.2
1,487,120 - Dsui_1432 0.81 +0.9
1,487,194 - Dsui_1432 0.88 -0.3
1,487,216 - Dsui_1432 0.90 -0.3
1,487,226 - -0.9
1,487,350 + +0.9
1,487,423 + Dsui_1433 0.17 -1.4
1,487,431 + Dsui_1433 0.19 +0.6
1,487,866 + -1.1
1,487,874 - +0.1
1,487,888 + -1.0
1,487,988 + Dsui_1434 0.19 +0.9
1,487,988 + Dsui_1434 0.19 +1.9
1,487,991 - Dsui_1434 0.19 -0.6
1,488,030 - Dsui_1434 0.24 -0.5
1,488,207 - Dsui_1434 0.46 -1.7
1,488,286 + Dsui_1434 0.55 -2.7
1,488,286 + Dsui_1434 0.55 -0.5
1,488,673 - -0.8
1,488,724 + Dsui_1435 0.14 -0.6
1,488,863 + Dsui_1435 0.39 +1.3
1,488,863 + Dsui_1435 0.39 -0.4
1,488,871 - Dsui_1435 0.40 -0.8
1,488,909 + Dsui_1435 0.47 +0.4
1,489,127 + Dsui_1435 0.86 -1.6
1,489,205 + +1.2
1,489,317 + +0.2
1,489,441 + Dsui_1436 0.14 -0.9
1,489,481 - Dsui_1436 0.16 +0.8
1,489,509 - Dsui_1436 0.18 +0.6
1,489,509 - Dsui_1436 0.18 +0.4

Or see this region's nucleotide sequence