Strain Fitness in Dechlorosoma suillum PS around Dsui_0060

Experiment: Anaerobic, acetate donor; nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0058 and Dsui_0059 overlap by 62 nucleotidesDsui_0059 and Dsui_0060 are separated by 3 nucleotidesDsui_0060 and Dsui_0061 overlap by 4 nucleotides Dsui_0058: Dsui_0058 - Glycosyl transferase family 11, at 55,496 to 56,431 _0058 Dsui_0059: Dsui_0059 - glycosyl transferase, at 56,370 to 57,104 _0059 Dsui_0060: Dsui_0060 - GDP-D-mannose dehydratase, at 57,108 to 58,082 _0060 Dsui_0061: Dsui_0061 - glycosyltransferase, at 58,079 to 59,182 _0061 Position (kb) 57 58 59Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 56.149 kb on - strand, within Dsui_0058at 56.159 kb on + strand, within Dsui_0058at 56.193 kb on - strand, within Dsui_0058at 56.250 kb on - strand, within Dsui_0058at 56.367 kb on + strandat 56.386 kb on - strandat 56.391 kb on + strandat 56.426 kb on - strandat 56.464 kb on + strand, within Dsui_0059at 56.677 kb on - strand, within Dsui_0059at 56.787 kb on - strand, within Dsui_0059at 56.860 kb on + strand, within Dsui_0059at 56.860 kb on + strand, within Dsui_0059at 56.860 kb on + strand, within Dsui_0059at 56.865 kb on + strand, within Dsui_0059at 56.865 kb on + strand, within Dsui_0059at 56.868 kb on - strand, within Dsui_0059at 56.868 kb on - strand, within Dsui_0059at 56.871 kb on + strand, within Dsui_0059at 56.873 kb on - strand, within Dsui_0059at 56.957 kb on + strand, within Dsui_0059at 57.007 kb on - strand, within Dsui_0059at 57.021 kb on + strand, within Dsui_0059at 57.041 kb on - strandat 57.106 kb on + strandat 57.119 kb on - strandat 57.132 kb on - strandat 57.137 kb on - strandat 57.139 kb on + strandat 57.147 kb on - strandat 57.147 kb on - strandat 57.183 kb on - strandat 57.275 kb on - strand, within Dsui_0060at 57.283 kb on - strand, within Dsui_0060at 57.297 kb on - strand, within Dsui_0060at 57.331 kb on + strand, within Dsui_0060at 57.420 kb on + strand, within Dsui_0060at 57.486 kb on + strand, within Dsui_0060at 57.539 kb on - strand, within Dsui_0060at 57.584 kb on + strand, within Dsui_0060at 57.590 kb on - strand, within Dsui_0060at 57.592 kb on - strand, within Dsui_0060at 57.681 kb on + strand, within Dsui_0060at 57.762 kb on - strand, within Dsui_0060at 57.764 kb on + strand, within Dsui_0060at 57.764 kb on + strand, within Dsui_0060at 57.772 kb on - strand, within Dsui_0060at 57.816 kb on + strand, within Dsui_0060at 57.829 kb on - strand, within Dsui_0060at 57.831 kb on + strand, within Dsui_0060at 57.831 kb on + strand, within Dsui_0060at 57.838 kb on - strand, within Dsui_0060at 57.863 kb on + strand, within Dsui_0060at 57.863 kb on + strand, within Dsui_0060at 57.882 kb on + strand, within Dsui_0060at 57.888 kb on - strand, within Dsui_0060at 57.903 kb on + strand, within Dsui_0060at 57.994 kb on + strandat 57.994 kb on + strandat 58.003 kb on + strandat 58.023 kb on - strandat 58.046 kb on - strandat 58.087 kb on + strandat 58.128 kb on + strandat 58.138 kb on + strandat 58.148 kb on + strandat 58.148 kb on + strandat 58.215 kb on + strand, within Dsui_0061at 58.276 kb on + strand, within Dsui_0061at 58.320 kb on + strand, within Dsui_0061at 58.333 kb on - strand, within Dsui_0061at 58.352 kb on - strand, within Dsui_0061at 58.359 kb on + strand, within Dsui_0061at 58.421 kb on - strand, within Dsui_0061at 58.421 kb on - strand, within Dsui_0061at 58.515 kb on - strand, within Dsui_0061at 58.585 kb on + strand, within Dsui_0061at 58.632 kb on - strand, within Dsui_0061at 58.662 kb on - strand, within Dsui_0061at 58.672 kb on + strand, within Dsui_0061at 58.674 kb on + strand, within Dsui_0061at 58.680 kb on + strand, within Dsui_0061at 58.687 kb on - strand, within Dsui_0061at 58.688 kb on - strand, within Dsui_0061at 58.693 kb on - strand, within Dsui_0061at 58.706 kb on - strand, within Dsui_0061at 58.709 kb on + strand, within Dsui_0061at 58.709 kb on + strand, within Dsui_0061at 58.773 kb on + strand, within Dsui_0061at 58.773 kb on + strand, within Dsui_0061at 58.818 kb on - strand, within Dsui_0061at 58.823 kb on - strand, within Dsui_0061at 58.843 kb on - strand, within Dsui_0061at 58.889 kb on + strand, within Dsui_0061at 58.908 kb on + strand, within Dsui_0061at 58.914 kb on + strand, within Dsui_0061at 58.914 kb on + strand, within Dsui_0061at 58.922 kb on - strand, within Dsui_0061at 58.922 kb on - strand, within Dsui_0061at 58.922 kb on - strand, within Dsui_0061at 58.929 kb on + strand, within Dsui_0061at 58.937 kb on - strand, within Dsui_0061at 58.941 kb on + strand, within Dsui_0061at 58.941 kb on + strand, within Dsui_0061at 58.949 kb on - strand, within Dsui_0061at 58.949 kb on - strand, within Dsui_0061at 58.958 kb on + strand, within Dsui_0061at 58.989 kb on + strand, within Dsui_0061at 58.994 kb on + strand, within Dsui_0061at 59.025 kb on - strand, within Dsui_0061at 59.057 kb on - strand, within Dsui_0061at 59.057 kb on - strand, within Dsui_0061at 59.074 kb on - strandat 59.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate electron acceptor
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56,149 - Dsui_0058 0.70 +3.8
56,159 + Dsui_0058 0.71 +0.9
56,193 - Dsui_0058 0.74 +0.9
56,250 - Dsui_0058 0.81 +1.3
56,367 + +0.8
56,386 - +1.7
56,391 + +1.9
56,426 - +1.0
56,464 + Dsui_0059 0.13 +1.8
56,677 - Dsui_0059 0.42 +1.1
56,787 - Dsui_0059 0.57 +1.5
56,860 + Dsui_0059 0.67 +1.8
56,860 + Dsui_0059 0.67 +2.0
56,860 + Dsui_0059 0.67 +5.0
56,865 + Dsui_0059 0.67 +2.1
56,865 + Dsui_0059 0.67 +0.9
56,868 - Dsui_0059 0.68 +1.6
56,868 - Dsui_0059 0.68 +1.4
56,871 + Dsui_0059 0.68 +1.2
56,873 - Dsui_0059 0.68 +1.9
56,957 + Dsui_0059 0.80 +1.6
57,007 - Dsui_0059 0.87 +1.6
57,021 + Dsui_0059 0.89 +2.5
57,041 - +0.3
57,106 + -0.1
57,119 - -0.1
57,132 - +0.2
57,137 - -0.1
57,139 + +1.0
57,147 - -0.8
57,147 - -0.2
57,183 - +1.1
57,275 - Dsui_0060 0.17 +3.1
57,283 - Dsui_0060 0.18 +0.8
57,297 - Dsui_0060 0.19 +1.6
57,331 + Dsui_0060 0.23 +1.6
57,420 + Dsui_0060 0.32 +1.6
57,486 + Dsui_0060 0.39 +0.5
57,539 - Dsui_0060 0.44 +1.4
57,584 + Dsui_0060 0.49 +2.0
57,590 - Dsui_0060 0.49 +0.1
57,592 - Dsui_0060 0.50 +1.0
57,681 + Dsui_0060 0.59 +0.4
57,762 - Dsui_0060 0.67 +2.0
57,764 + Dsui_0060 0.67 +1.4
57,764 + Dsui_0060 0.67 +0.9
57,772 - Dsui_0060 0.68 +1.5
57,816 + Dsui_0060 0.73 +0.4
57,829 - Dsui_0060 0.74 +0.9
57,831 + Dsui_0060 0.74 +1.2
57,831 + Dsui_0060 0.74 +1.4
57,838 - Dsui_0060 0.75 +1.3
57,863 + Dsui_0060 0.77 +5.8
57,863 + Dsui_0060 0.77 +0.8
57,882 + Dsui_0060 0.79 +0.9
57,888 - Dsui_0060 0.80 +1.2
57,903 + Dsui_0060 0.82 +1.4
57,994 + +5.4
57,994 + +0.7
58,003 + +0.5
58,023 - +0.8
58,046 - +1.4
58,087 + +1.2
58,128 + +1.6
58,138 + +0.8
58,148 + +0.7
58,148 + +1.8
58,215 + Dsui_0061 0.12 -0.1
58,276 + Dsui_0061 0.18 +5.9
58,320 + Dsui_0061 0.22 +0.9
58,333 - Dsui_0061 0.23 +1.3
58,352 - Dsui_0061 0.25 +1.0
58,359 + Dsui_0061 0.25 +0.9
58,421 - Dsui_0061 0.31 +1.6
58,421 - Dsui_0061 0.31 +1.7
58,515 - Dsui_0061 0.39 +1.1
58,585 + Dsui_0061 0.46 +0.9
58,632 - Dsui_0061 0.50 +1.5
58,662 - Dsui_0061 0.53 +1.4
58,672 + Dsui_0061 0.54 +0.9
58,674 + Dsui_0061 0.54 +1.2
58,680 + Dsui_0061 0.54 +1.4
58,687 - Dsui_0061 0.55 +1.0
58,688 - Dsui_0061 0.55 +1.4
58,693 - Dsui_0061 0.56 +0.4
58,706 - Dsui_0061 0.57 +1.1
58,709 + Dsui_0061 0.57 +1.5
58,709 + Dsui_0061 0.57 +1.2
58,773 + Dsui_0061 0.63 +1.1
58,773 + Dsui_0061 0.63 +1.9
58,818 - Dsui_0061 0.67 +0.8
58,823 - Dsui_0061 0.67 +1.7
58,843 - Dsui_0061 0.69 +0.2
58,889 + Dsui_0061 0.73 +1.6
58,908 + Dsui_0061 0.75 +2.5
58,914 + Dsui_0061 0.76 +2.5
58,914 + Dsui_0061 0.76 +2.5
58,922 - Dsui_0061 0.76 +1.4
58,922 - Dsui_0061 0.76 +1.5
58,922 - Dsui_0061 0.76 +1.7
58,929 + Dsui_0061 0.77 +0.6
58,937 - Dsui_0061 0.78 +1.6
58,941 + Dsui_0061 0.78 +2.3
58,941 + Dsui_0061 0.78 +0.8
58,949 - Dsui_0061 0.79 +1.4
58,949 - Dsui_0061 0.79 +1.3
58,958 + Dsui_0061 0.80 +2.2
58,989 + Dsui_0061 0.82 +1.9
58,994 + Dsui_0061 0.83 +1.8
59,025 - Dsui_0061 0.86 +3.0
59,057 - Dsui_0061 0.89 +1.4
59,057 - Dsui_0061 0.89 +1.3
59,074 - +0.9
59,076 - +1.5

Or see this region's nucleotide sequence