Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01552

Experiment: Growth in M5G

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth in M5G
1,664,872	+		CCNA_01550	0.60	-2.5
1,664,875	-		CCNA_01550	0.61	-2.5
1,664,939	-		CCNA_01550	0.67	+0.2
1,664,943	+		CCNA_01550	0.67	-2.2
1,664,946	-		CCNA_01550	0.68	-4.8
1,664,967	+		CCNA_01550	0.70	+0.4
1,664,986	+		CCNA_01550	0.72	-3.2
1,664,996	+		CCNA_01550	0.73	-1.5
1,665,012	-		CCNA_01550	0.75	-3.0
1,665,035	-		CCNA_01550	0.77	-2.2
1,665,060	+		CCNA_01550	0.79	-3.7
1,665,068	+		CCNA_01550	0.80	-0.8
1,665,071	-		CCNA_01550	0.81	-3.0
1,665,071	-		CCNA_01550	0.81	-2.3
1,665,073	-		CCNA_01550	0.81	-2.7
1,665,099	-		CCNA_01550	0.83	-2.0
1,665,132	+		CCNA_01550	0.87	-0.5
1,665,143	+		CCNA_01550	0.88	-0.5
1,665,206	-				-3.2
1,665,257	+				-2.4
1,665,316	+				-1.0
1,665,316	+				-0.3
1,665,317	+				+2.5
1,665,329	+				-0.6
1,665,337	-				-0.7
1,665,394	-				+0.4
1,665,484	+				-1.0
1,665,527	+		CCNA_01551	0.21	-0.6
1,665,535	-		CCNA_01551	0.25	-0.3
1,665,542	-		CCNA_01551	0.28	+0.7
1,665,601	-		CCNA_01551	0.55	-0.5
1,665,601	-		CCNA_01551	0.55	-0.6
1,665,602	-		CCNA_01551	0.56	+0.9
1,665,603	+		CCNA_01551	0.56	+1.3
1,665,611	-		CCNA_01551	0.60	-1.2
1,665,689	-				-0.9
1,665,689	-				+0.5
1,665,765	+				+0.6
1,665,765	+				+0.0
1,665,772	+				+0.4
1,665,790	+				+0.1
1,665,811	+				+0.1
1,665,819	-				+0.3
1,665,839	+				-0.1
1,665,936	+				+0.2
1,665,936	+				-3.0
1,665,936	+				+0.0
1,665,936	+				-0.0
1,665,936	+				+0.7
1,665,937	+				+0.6
1,665,944	-				-0.3
1,665,944	-				-1.6
1,665,963	+				+0.5
1,665,963	-				-0.5
1,666,043	-				-0.9
1,666,048	+				+1.0
1,666,089	+				+0.5
1,666,119	+				+0.5
1,666,265	+		CCNA_01552	0.15	-0.2
1,666,265	+		CCNA_01552	0.15	+0.3
1,666,280	-		CCNA_01552	0.15	+0.4
1,666,308	+		CCNA_01552	0.16	+1.5
1,666,308	+		CCNA_01552	0.16	-0.8
1,666,308	+		CCNA_01552	0.16	-0.1
1,666,308	+		CCNA_01552	0.16	+0.3
1,666,354	+		CCNA_01552	0.18	+4.5
1,666,445	+		CCNA_01552	0.22	-0.3
1,666,460	+		CCNA_01552	0.22	-0.0
1,666,462	+		CCNA_01552	0.22	-0.1
1,666,520	+		CCNA_01552	0.24	+0.4
1,666,542	+		CCNA_01552	0.25	-0.2
1,666,555	+		CCNA_01552	0.26	-0.0
1,666,713	-		CCNA_01552	0.32	-0.3
1,666,770	-		CCNA_01552	0.34	+0.5
1,666,772	+		CCNA_01552	0.34	+1.7
1,666,782	+		CCNA_01552	0.34	+0.3
1,666,784	+		CCNA_01552	0.34	+0.1
1,666,790	-		CCNA_01552	0.35	+0.3
1,666,817	-		CCNA_01552	0.36	-0.2
1,666,830	+		CCNA_01552	0.36	+1.1
1,666,849	+		CCNA_01552	0.37	-0.6
1,666,860	+		CCNA_01552	0.37	-0.1
1,666,907	+		CCNA_01552	0.39	+0.5
1,666,930	+		CCNA_01552	0.40	+0.0
1,666,953	+		CCNA_01552	0.41	+0.6
1,666,953	+		CCNA_01552	0.41	-0.1
1,667,098	-		CCNA_01552	0.46	+2.0
1,667,127	-		CCNA_01552	0.47	+0.2
1,667,134	+		CCNA_01552	0.48	-0.4
1,667,134	+		CCNA_01552	0.48	+0.0
1,667,142	-		CCNA_01552	0.48	-1.3
1,667,182	+		CCNA_01552	0.49	-0.5
1,667,242	+		CCNA_01552	0.52	+0.3
1,667,255	-		CCNA_01552	0.52	+0.5
1,667,319	+		CCNA_01552	0.55	+0.9
1,667,351	-		CCNA_01552	0.56	-2.2
1,667,355	+		CCNA_01552	0.56	-0.0
1,667,360	+		CCNA_01552	0.56	+0.7
1,667,433	+		CCNA_01552	0.59	-0.7
1,667,451	-		CCNA_01552	0.60	-0.0
1,667,470	-		CCNA_01552	0.60	+0.1
1,667,488	+		CCNA_01552	0.61	+0.1
1,667,540	+		CCNA_01552	0.63	-0.3
1,667,566	+		CCNA_01552	0.64	-0.4
1,667,585	+		CCNA_01552	0.65	+0.2
1,667,587	+		CCNA_01552	0.65	-0.2
1,667,604	-		CCNA_01552	0.65	-1.6
1,667,604	-		CCNA_01552	0.65	-0.8
1,667,607	+		CCNA_01552	0.66	+0.2
1,667,616	-		CCNA_01552	0.66	+0.3
1,667,667	+		CCNA_01552	0.68	+0.7
1,667,697	+		CCNA_01552	0.69	+0.8
1,667,756	-		CCNA_01552	0.71	-1.4
1,667,798	+		CCNA_01552	0.73	+0.2
1,667,798	+		CCNA_01552	0.73	-0.0
1,667,806	-				-1.0
1,667,830	+		CCNA_01552	0.74	+0.2
1,667,947	+		CCNA_01552	0.78	+0.4
1,668,004	+		CCNA_01552	0.81	+0.5
1,668,008	-		CCNA_01552	0.81	-0.1
1,668,025	+		CCNA_01552	0.81	-1.0
1,668,054	+		CCNA_01552	0.82	+0.5
1,668,116	-		CCNA_01552	0.85	-0.9
1,668,133	-		CCNA_01552	0.85	-0.3
1,668,135	-		CCNA_01552	0.85	-0.8
1,668,136	+		CCNA_01552	0.86	-0.2
1,668,139	+		CCNA_01552	0.86	+0.4
1,668,152	-		CCNA_01552	0.86	-1.2
1,668,161	+		CCNA_01552	0.86	+0.4
1,668,161	+		CCNA_01552	0.86	+0.2
1,668,169	-		CCNA_01552	0.87	-3.3
1,668,169	-		CCNA_01552	0.87	+0.3
1,668,187	+		CCNA_01552	0.87	+0.2
1,668,190	+		CCNA_01552	0.88	-0.4
1,668,193	-		CCNA_01552	0.88	+0.1
1,668,200	-		CCNA_01552	0.88	-0.9
1,668,200	-		CCNA_01552	0.88	-1.2
1,668,231	-		CCNA_01552	0.89	-2.4
1,668,270	-				+0.7
1,668,270	-				+0.5
1,668,295	-				+0.2
1,668,297	+				+1.0
1,668,374	-				+1.0
1,668,384	+				+2.1
1,668,393	+				+1.0
1,668,430	+				+0.0
1,668,451	+				+0.1
1,668,454	+				+0.5
1,668,454	+				+0.3
1,668,459	-				-0.2
1,668,462	-				+0.0
1,668,472	+				+0.3
1,668,480	-				-2.5
1,668,513	+				+0.7
1,668,513	+				+0.5
1,668,521	-				-1.5
1,668,521	-				-0.3
1,668,521	-				-0.6
1,668,521	-				+0.7
1,668,544	+				-0.0
1,668,547	-				+0.1
1,668,552	-				-0.7
1,668,552	-				-0.2
1,668,566	+				-1.4
1,668,587	-				+0.1
1,668,639	+		CCNA_01553	0.19	+0.0
1,668,647	-		CCNA_01553	0.20	-1.3
1,668,647	-		CCNA_01553	0.20	-0.7
1,668,647	-		CCNA_01553	0.20	+0.1
1,668,726	-		CCNA_01553	0.34	-1.2
1,668,726	-		CCNA_01553	0.34	-0.6
1,668,748	+		CCNA_01553	0.38	-0.4
1,668,768	-		CCNA_01553	0.42	-1.3
1,668,815	+		CCNA_01553	0.50	-0.2
1,668,815	+		CCNA_01553	0.50	-0.6
1,668,815	+		CCNA_01553	0.50	+0.2
1,668,815	+		CCNA_01553	0.50	-0.2
1,668,815	+		CCNA_01553	0.50	-0.7
1,668,815	+		CCNA_01553	0.50	-0.7
1,668,823	-		CCNA_01553	0.52	+0.8
1,668,823	-		CCNA_01553	0.52	-2.4
1,668,823	-		CCNA_01553	0.52	-0.4
1,668,823	-		CCNA_01553	0.52	-0.7
1,668,823	-		CCNA_01553	0.52	-0.9
1,668,823	-		CCNA_01553	0.52	-0.3
1,668,839	+		CCNA_01553	0.54	+0.0
1,668,843	+		CCNA_01553	0.55	+0.4
1,668,859	+		CCNA_01553	0.58	-0.2
1,668,864	+		CCNA_01553	0.59	-0.3
1,668,867	-		CCNA_01553	0.59	-1.4
1,668,910	+		CCNA_01553	0.67	-0.3
1,668,931	+		CCNA_01553	0.71	-0.4
1,668,945	+		CCNA_01553	0.73	-0.6
1,669,000	+		CCNA_01553	0.83	-0.4
1,669,023	+		CCNA_01553	0.87	-0.5
1,669,054	-				+0.7
1,669,073	-				-0.7
1,669,104	+				-0.5
1,669,104	+				+0.7
1,669,112	-				+0.9
1,669,153	-				+0.4
1,669,169	+				+0.5
1,669,169	+				-0.1
1,669,169	+				+0.0
1,669,172	-				+0.5
1,669,177	-				-0.6
1,669,192	+				-0.8
1,669,192	+				-0.4
1,669,192	+				-0.2
1,669,202	+				+1.4
1,669,205	-				-0.1
1,669,205	-				+0.1
1,669,210	-				-1.0
1,669,270	-		CCNA_01554	0.12	-0.6
1,669,352	-		CCNA_01554	0.18	-0.4
1,669,353	-		CCNA_01554	0.18	+0.1
1,669,353	-		CCNA_01554	0.18	+0.6
1,669,407	-		CCNA_01554	0.22	+0.5
1,669,463	-		CCNA_01554	0.26	+1.0
1,669,480	+		CCNA_01554	0.27	+0.2
1,669,480	+		CCNA_01554	0.27	-0.2
1,669,484	-		CCNA_01554	0.27	+0.4
1,669,488	-		CCNA_01554	0.27	-0.1
1,669,498	+		CCNA_01554	0.28	-1.2