Experiment: Growth in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00282 and CCNA_00283 are separated by 117 nucleotides CCNA_00283 and CCNA_00284 overlap by 4 nucleotides CCNA_00284 and CCNA_00285 overlap by 4 nucleotides
CCNA_00282: CCNA_00282 - conserved cell surface protein, at 294,659 to 294,991
_00282
CCNA_00283: CCNA_00283 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, at 295,109 to 295,969
_00283
CCNA_00284: CCNA_00284 - pyrimidine 5'-nucleotidase family protein, at 295,966 to 296,631
_00284
CCNA_00285: CCNA_00285 - acetylglutamate kinase, at 296,628 to 297,542
_00285
Position (kb) 295
296
297 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 294.994 kb on - strand at 294.995 kb on - strand at 295.041 kb on - strand at 295.050 kb on - strand at 295.078 kb on + strand at 295.107 kb on + strand at 295.962 kb on - strand at 296.044 kb on + strand, within CCNA_00284 at 296.053 kb on - strand, within CCNA_00284 at 296.068 kb on + strand, within CCNA_00284 at 296.068 kb on + strand, within CCNA_00284 at 296.068 kb on + strand, within CCNA_00284 at 296.073 kb on + strand, within CCNA_00284 at 296.073 kb on + strand, within CCNA_00284 at 296.073 kb on + strand, within CCNA_00284 at 296.076 kb on - strand, within CCNA_00284 at 296.076 kb on - strand, within CCNA_00284 at 296.076 kb on - strand, within CCNA_00284 at 296.076 kb on - strand, within CCNA_00284 at 296.076 kb on - strand, within CCNA_00284 at 296.076 kb on - strand, within CCNA_00284 at 296.080 kb on + strand, within CCNA_00284 at 296.081 kb on - strand, within CCNA_00284 at 296.081 kb on - strand, within CCNA_00284 at 296.088 kb on - strand, within CCNA_00284 at 296.153 kb on + strand, within CCNA_00284 at 296.156 kb on - strand, within CCNA_00284 at 296.183 kb on - strand, within CCNA_00284 at 296.183 kb on - strand, within CCNA_00284 at 296.183 kb on - strand, within CCNA_00284 at 296.183 kb on - strand, within CCNA_00284 at 296.269 kb on + strand, within CCNA_00284 at 296.346 kb on + strand, within CCNA_00284 at 296.352 kb on + strand, within CCNA_00284 at 296.352 kb on + strand, within CCNA_00284 at 296.360 kb on - strand, within CCNA_00284 at 296.360 kb on - strand, within CCNA_00284 at 296.366 kb on - strand, within CCNA_00284 at 296.366 kb on - strand, within CCNA_00284 at 296.437 kb on + strand, within CCNA_00284 at 296.445 kb on - strand, within CCNA_00284 at 296.447 kb on + strand, within CCNA_00284 at 296.449 kb on + strand, within CCNA_00284 at 296.449 kb on + strand, within CCNA_00284 at 296.450 kb on - strand, within CCNA_00284 at 296.450 kb on - strand, within CCNA_00284 at 296.455 kb on - strand, within CCNA_00284 at 296.455 kb on - strand, within CCNA_00284 at 296.619 kb on + strand at 296.620 kb on - strand at 296.620 kb on - strand at 297.617 kb on + strand at 297.619 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth in M5G remove 294,994 - -0.6 294,995 - +0.5 295,041 - +0.5 295,050 - +0.4 295,078 + -0.4 295,107 + -0.5 295,962 - -1.6 296,044 + CCNA_00284 0.12 -0.9 296,053 - CCNA_00284 0.13 -1.1 296,068 + CCNA_00284 0.15 -2.7 296,068 + CCNA_00284 0.15 -2.5 296,068 + CCNA_00284 0.15 -1.2 296,073 + CCNA_00284 0.16 -1.4 296,073 + CCNA_00284 0.16 -1.4 296,073 + CCNA_00284 0.16 -2.0 296,076 - CCNA_00284 0.17 -0.5 296,076 - CCNA_00284 0.17 -0.9 296,076 - CCNA_00284 0.17 -1.9 296,076 - CCNA_00284 0.17 -1.7 296,076 - CCNA_00284 0.17 -2.2 296,076 - CCNA_00284 0.17 +0.8 296,080 + CCNA_00284 0.17 +0.1 296,081 - CCNA_00284 0.17 -2.1 296,081 - CCNA_00284 0.17 -1.1 296,088 - CCNA_00284 0.18 -1.3 296,153 + CCNA_00284 0.28 -1.9 296,156 - CCNA_00284 0.29 +0.5 296,183 - CCNA_00284 0.33 -0.8 296,183 - CCNA_00284 0.33 -0.9 296,183 - CCNA_00284 0.33 -0.5 296,183 - CCNA_00284 0.33 -0.6 296,269 + CCNA_00284 0.45 -2.7 296,346 + CCNA_00284 0.57 -2.1 296,352 + CCNA_00284 0.58 -2.4 296,352 + CCNA_00284 0.58 -2.0 296,360 - CCNA_00284 0.59 -2.9 296,360 - CCNA_00284 0.59 -2.6 296,366 - CCNA_00284 0.60 -0.7 296,366 - CCNA_00284 0.60 -2.8 296,437 + CCNA_00284 0.71 -1.7 296,445 - CCNA_00284 0.72 -2.5 296,447 + CCNA_00284 0.72 -2.5 296,449 + CCNA_00284 0.73 -2.8 296,449 + CCNA_00284 0.73 +1.3 296,450 - CCNA_00284 0.73 -3.8 296,450 - CCNA_00284 0.73 -2.4 296,455 - CCNA_00284 0.73 -0.3 296,455 - CCNA_00284 0.73 -3.5 296,619 + -2.6 296,620 - -1.5 296,620 - -1.7 297,617 + -1.4 297,619 + -0.5
Or see this region's nucleotide sequence