Experiment: BHIS with Ceftriaxone hemi(heptahydrate) 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0725 and BT0726 are separated by 192 nucleotides BT0726 and BT0727 are separated by 225 nucleotides BT0727 and BT0728 are separated by 349 nucleotides
BT0725: BT0725 - dTDP-4-dehydrorhamnose reductase (NCBI ptt file), at 899,030 to 899,938
BT0725
BT0726: BT0726 - conserved hypothetical protein (NCBI ptt file), at 900,131 to 900,259
BT0726
BT0727: BT0727 - conserved hypothetical protein (NCBI ptt file), at 900,485 to 901,666
BT0727
BT0728: BT0728 - transcriptional regulator (NCBI ptt file), at 902,016 to 902,915
BT0728
Position (kb) 900
901
902 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 899.509 kb on - strand, within BT0725 at 899.542 kb on - strand, within BT0725 at 899.709 kb on - strand, within BT0725 at 899.763 kb on - strand, within BT0725 at 899.783 kb on - strand, within BT0725 at 899.783 kb on - strand, within BT0725 at 899.857 kb on + strand at 899.858 kb on - strand at 899.860 kb on - strand at 899.949 kb on - strand at 900.042 kb on - strand at 900.058 kb on + strand at 900.115 kb on - strand at 900.170 kb on + strand, within BT0726 at 900.171 kb on - strand, within BT0726 at 900.502 kb on - strand at 900.502 kb on - strand at 900.542 kb on - strand at 900.560 kb on - strand at 900.613 kb on - strand, within BT0727 at 900.613 kb on - strand, within BT0727 at 900.619 kb on + strand, within BT0727 at 900.620 kb on - strand, within BT0727 at 900.690 kb on - strand, within BT0727 at 900.712 kb on - strand, within BT0727 at 900.736 kb on - strand, within BT0727 at 900.793 kb on + strand, within BT0727 at 900.871 kb on - strand, within BT0727 at 900.871 kb on - strand, within BT0727 at 900.934 kb on - strand, within BT0727 at 900.963 kb on + strand, within BT0727 at 901.021 kb on - strand, within BT0727 at 901.042 kb on + strand, within BT0727 at 901.043 kb on - strand, within BT0727 at 901.091 kb on + strand, within BT0727 at 901.136 kb on + strand, within BT0727 at 901.285 kb on - strand, within BT0727 at 901.330 kb on + strand, within BT0727 at 901.333 kb on - strand, within BT0727 at 901.364 kb on - strand, within BT0727 at 901.423 kb on + strand, within BT0727 at 901.500 kb on + strand, within BT0727 at 901.536 kb on + strand, within BT0727 at 901.537 kb on - strand, within BT0727 at 901.559 kb on - strand at 901.647 kb on + strand at 901.682 kb on - strand at 901.691 kb on + strand at 901.701 kb on + strand at 901.742 kb on + strand at 901.806 kb on + strand at 901.809 kb on - strand at 901.831 kb on - strand at 902.130 kb on - strand, within BT0728 at 902.136 kb on - strand, within BT0728 at 902.140 kb on - strand, within BT0728 at 902.140 kb on - strand, within BT0728 at 902.154 kb on - strand, within BT0728 at 902.154 kb on - strand, within BT0728 at 902.209 kb on + strand, within BT0728 at 902.251 kb on - strand, within BT0728 at 902.303 kb on + strand, within BT0728 at 902.413 kb on - strand, within BT0728 at 902.445 kb on - strand, within BT0728 at 902.447 kb on - strand, within BT0728 at 902.447 kb on - strand, within BT0728 at 902.499 kb on + strand, within BT0728 at 902.500 kb on - strand, within BT0728
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Ceftriaxone hemi(heptahydrate) 0.2 mM remove 899,509 - BT0725 0.53 -0.5 899,542 - BT0725 0.56 -1.5 899,709 - BT0725 0.75 +1.3 899,763 - BT0725 0.81 -1.9 899,783 - BT0725 0.83 -0.9 899,783 - BT0725 0.83 +0.1 899,857 + -1.9 899,858 - +1.4 899,860 - -1.9 899,949 - +0.1 900,042 - +0.1 900,058 + -0.3 900,115 - -1.7 900,170 + BT0726 0.30 +0.1 900,171 - BT0726 0.31 +0.7 900,502 - -2.5 900,502 - -0.3 900,542 - +0.8 900,560 - +1.4 900,613 - BT0727 0.11 +2.1 900,613 - BT0727 0.11 -1.9 900,619 + BT0727 0.11 -1.9 900,620 - BT0727 0.11 -0.9 900,690 - BT0727 0.17 -2.5 900,712 - BT0727 0.19 -1.9 900,736 - BT0727 0.21 -1.9 900,793 + BT0727 0.26 +0.1 900,871 - BT0727 0.33 -1.9 900,871 - BT0727 0.33 -1.9 900,934 - BT0727 0.38 -1.5 900,963 + BT0727 0.40 -2.7 901,021 - BT0727 0.45 -1.5 901,042 + BT0727 0.47 -0.9 901,043 - BT0727 0.47 -2.2 901,091 + BT0727 0.51 -0.5 901,136 + BT0727 0.55 -0.4 901,285 - BT0727 0.68 +0.1 901,330 + BT0727 0.71 +0.1 901,333 - BT0727 0.72 +0.7 901,364 - BT0727 0.74 -1.2 901,423 + BT0727 0.79 -1.9 901,500 + BT0727 0.86 +0.7 901,536 + BT0727 0.89 -1.2 901,537 - BT0727 0.89 -1.2 901,559 - +1.7 901,647 + -1.9 901,682 - -0.9 901,691 + -0.5 901,701 + -3.3 901,742 + -1.2 901,806 + -0.1 901,809 - +0.1 901,831 - -2.2 902,130 - BT0728 0.13 -0.9 902,136 - BT0728 0.13 -0.9 902,140 - BT0728 0.14 -2.3 902,140 - BT0728 0.14 -2.1 902,154 - BT0728 0.15 -0.5 902,154 - BT0728 0.15 +1.1 902,209 + BT0728 0.21 +0.1 902,251 - BT0728 0.26 -0.4 902,303 + BT0728 0.32 +0.1 902,413 - BT0728 0.44 +0.1 902,445 - BT0728 0.48 -1.8 902,447 - BT0728 0.48 +0.1 902,447 - BT0728 0.48 -2.2 902,499 + BT0728 0.54 +1.4 902,500 - BT0728 0.54 -1.5
Or see this region's nucleotide sequence