Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1875

Experiment: BG11 with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BG11 with nitrate 100 mM
1,945,715	-		Synpcc7942_1873	0.47	-0.2
1,945,749	+		Synpcc7942_1873	0.52	+0.9
1,945,760	+		Synpcc7942_1873	0.53	-0.2
1,945,815	-		Synpcc7942_1873	0.62	-1.6
1,945,911	-		Synpcc7942_1873	0.76	-0.2
1,946,046	-				-0.7
1,946,082	+				+1.1
1,946,125	+				+1.1
1,946,146	+				-0.0
1,946,146	+				+1.2
1,946,273	+		Synpcc7942_1874	0.25	-1.7
1,946,281	-		Synpcc7942_1874	0.27	+0.2
1,946,281	-		Synpcc7942_1874	0.27	-0.5
1,946,281	-		Synpcc7942_1874	0.27	-2.2
1,946,419	-		Synpcc7942_1874	0.56	-2.4
1,946,442	-		Synpcc7942_1874	0.61	+0.9
1,946,449	+		Synpcc7942_1874	0.63	-0.8
1,946,456	+		Synpcc7942_1874	0.64	-0.4
1,946,456	-		Synpcc7942_1874	0.64	+0.2
1,946,505	+		Synpcc7942_1874	0.75	-0.4
1,946,508	-		Synpcc7942_1874	0.75	-1.6
1,946,510	+		Synpcc7942_1874	0.76	-0.9
1,946,524	+		Synpcc7942_1874	0.79	+0.4
1,946,535	+		Synpcc7942_1874	0.81	+0.4
1,946,557	+		Synpcc7942_1874	0.86	-1.0
1,946,557	+		Synpcc7942_1874	0.86	+1.6
1,946,565	-		Synpcc7942_1874	0.87	+1.5
1,946,565	-		Synpcc7942_1874	0.87	-0.5
1,946,567	+		Synpcc7942_1874	0.88	-0.7
1,946,678	+				+1.4
1,946,687	+				+2.0
1,946,745	+				-1.3
1,946,754	-				+0.5
1,946,786	+				+1.4
1,946,794	-				+0.1
1,946,798	-				+2.7
1,946,852	+		Synpcc7942_1875	0.11	+1.6
1,946,860	+		Synpcc7942_1875	0.11	+2.1
1,946,862	+		Synpcc7942_1875	0.11	+2.8
1,946,866	+		Synpcc7942_1875	0.12	+2.2
1,946,874	-		Synpcc7942_1875	0.12	+1.8
1,946,887	-		Synpcc7942_1875	0.13	-1.1
1,946,917	+		Synpcc7942_1875	0.15	-0.1
1,946,991	-		Synpcc7942_1875	0.21	+0.9
1,946,997	+		Synpcc7942_1875	0.21	+2.5
1,946,997	+		Synpcc7942_1875	0.21	+0.6
1,947,000	-		Synpcc7942_1875	0.21	+1.6
1,947,084	+		Synpcc7942_1875	0.27	+4.0
1,947,148	+		Synpcc7942_1875	0.32	+1.0
1,947,156	-		Synpcc7942_1875	0.32	+1.2
1,947,217	+		Synpcc7942_1875	0.37	+1.0
1,947,219	-		Synpcc7942_1875	0.37	+1.1
1,947,289	+		Synpcc7942_1875	0.42	+2.2
1,947,303	-		Synpcc7942_1875	0.43	-0.0
1,947,303	-		Synpcc7942_1875	0.43	+1.3
1,947,310	-		Synpcc7942_1875	0.43	+0.5
1,947,312	+		Synpcc7942_1875	0.44	+1.2
1,947,336	-		Synpcc7942_1875	0.45	+0.7
1,947,336	-		Synpcc7942_1875	0.45	+0.5
1,947,352	+		Synpcc7942_1875	0.46	+1.6
1,947,352	+		Synpcc7942_1875	0.46	+1.2
1,947,360	-		Synpcc7942_1875	0.47	+1.2
1,947,398	-		Synpcc7942_1875	0.50	+0.2
1,947,463	+		Synpcc7942_1875	0.54	+2.8
1,947,468	+		Synpcc7942_1875	0.55	+0.4
1,947,468	+		Synpcc7942_1875	0.55	+0.9
1,947,468	+		Synpcc7942_1875	0.55	+2.2
1,947,471	-		Synpcc7942_1875	0.55	-2.2
1,947,471	-		Synpcc7942_1875	0.55	-0.5
1,947,471	-		Synpcc7942_1875	0.55	+0.4
1,947,471	-		Synpcc7942_1875	0.55	+1.6
1,947,473	+		Synpcc7942_1875	0.55	+3.5
1,947,473	+		Synpcc7942_1875	0.55	-1.0
1,947,473	+		Synpcc7942_1875	0.55	-2.8
1,947,476	-		Synpcc7942_1875	0.55	+1.7
1,947,476	-		Synpcc7942_1875	0.55	+1.8
1,947,481	-		Synpcc7942_1875	0.56	-0.5
1,947,481	-		Synpcc7942_1875	0.56	-0.6
1,947,481	-		Synpcc7942_1875	0.56	+1.1
1,947,481	-		Synpcc7942_1875	0.56	-0.2
1,947,481	-		Synpcc7942_1875	0.56	+2.3
1,947,486	-		Synpcc7942_1875	0.56	+2.4
1,947,521	+		Synpcc7942_1875	0.59	+2.2
1,947,533	+		Synpcc7942_1875	0.59	+1.0
1,947,541	-		Synpcc7942_1875	0.60	+1.1
1,947,541	-		Synpcc7942_1875	0.60	-0.3
1,947,550	+		Synpcc7942_1875	0.61	+1.7
1,947,587	+		Synpcc7942_1875	0.63	+1.7
1,947,590	-		Synpcc7942_1875	0.63	+0.8
1,947,595	+		Synpcc7942_1875	0.64	-2.5
1,947,595	-		Synpcc7942_1875	0.64	-0.2
1,947,595	-		Synpcc7942_1875	0.64	+3.3
1,947,595	-		Synpcc7942_1875	0.64	+0.1
1,947,595	-		Synpcc7942_1875	0.64	-1.9
1,947,595	-		Synpcc7942_1875	0.64	+0.2
1,947,597	+		Synpcc7942_1875	0.64	+0.8
1,947,605	-		Synpcc7942_1875	0.65	+2.6
1,947,612	+		Synpcc7942_1875	0.65	+0.7
1,947,620	-		Synpcc7942_1875	0.66	-1.5
1,947,620	-		Synpcc7942_1875	0.66	+0.7
1,947,644	-		Synpcc7942_1875	0.67	-0.0
1,947,662	+		Synpcc7942_1875	0.69	+1.3
1,947,679	-		Synpcc7942_1875	0.70	+1.5
1,947,699	-		Synpcc7942_1875	0.71	+2.1
1,947,704	+		Synpcc7942_1875	0.72	+2.4
1,947,704	+		Synpcc7942_1875	0.72	+2.3
1,947,712	-		Synpcc7942_1875	0.72	+0.5
1,947,730	-		Synpcc7942_1875	0.73	+0.7
1,947,818	-		Synpcc7942_1875	0.80	+2.1
1,947,829	+		Synpcc7942_1875	0.81	-0.3
1,947,923	+		Synpcc7942_1875	0.87	+2.3
1,947,968	-				+2.6
1,947,993	+				+0.8
1,948,043	+				+1.4
1,948,051	-				+0.3
1,948,080	-				+1.2
1,948,098	+				+1.6
1,948,098	+				+0.9
1,948,106	-				-0.1
1,948,106	-				+0.8
1,948,111	-				+0.7
1,948,111	-				-1.2
1,948,133	-				-0.3
1,948,183	-				-0.8
1,948,201	+				+1.3
1,948,208	-				-0.9
1,948,209	-				-1.6
1,948,221	+				-2.1
1,948,239	+				-1.0
1,948,257	-		Synpcc7942_1876	0.14	+0.3
1,948,311	+		Synpcc7942_1876	0.28	-0.9
1,948,311	+		Synpcc7942_1876	0.28	-0.5
1,948,316	+		Synpcc7942_1876	0.30	-3.5
1,948,322	-		Synpcc7942_1876	0.31	+2.8
1,948,356	-		Synpcc7942_1876	0.40	-1.2
1,948,356	-		Synpcc7942_1876	0.40	-0.5
1,948,373	+		Synpcc7942_1876	0.45	-0.8
1,948,381	-		Synpcc7942_1876	0.47	+0.3
1,948,396	+		Synpcc7942_1876	0.51	-1.0
1,948,398	+		Synpcc7942_1876	0.51	-0.4
1,948,398	+		Synpcc7942_1876	0.51	-1.2
1,948,398	+		Synpcc7942_1876	0.51	-0.9
1,948,398	+		Synpcc7942_1876	0.51	+0.5
1,948,398	+		Synpcc7942_1876	0.51	+1.6
1,948,398	+		Synpcc7942_1876	0.51	+0.4
1,948,398	+		Synpcc7942_1876	0.51	-0.8
1,948,406	-		Synpcc7942_1876	0.53	-0.3
1,948,406	-		Synpcc7942_1876	0.53	-1.9
1,948,406	-		Synpcc7942_1876	0.53	-1.4
1,948,406	-		Synpcc7942_1876	0.53	+1.1
1,948,406	-		Synpcc7942_1876	0.53	+2.0
1,948,406	-		Synpcc7942_1876	0.53	+0.8
1,948,486	-		Synpcc7942_1876	0.74	-0.0
1,948,488	+		Synpcc7942_1876	0.75	+0.6
1,948,525	+		Synpcc7942_1876	0.85	+0.2
1,948,574	+				+0.3
1,948,580	+				-0.4
1,948,580	+				-0.6
1,948,582	-				+0.5
1,948,635	-				-0.0
1,948,663	-				-0.2
1,948,670	-				-0.8
1,948,675	-				-0.3
1,948,682	+				+1.4
1,948,688	+				-0.5
1,948,698	-				-0.7
1,948,707	-				+1.6
1,948,745	+				-0.2
1,948,745	+				-1.2
1,948,745	+				+0.5
1,948,750	+				-2.6
1,948,753	-				-0.4
1,948,765	-				+0.7
1,948,765	-				+0.6
1,948,765	-				+1.1
1,948,765	-				+0.2
1,948,768	-				+0.2
1,948,768	-				-0.9
1,948,788	-				-2.3
1,948,793	+				-1.6
1,948,793	+				+0.6
1,948,801	-				-2.5
1,948,801	-				-0.0
1,948,801	-				+2.0
1,948,801	-				-0.2
1,948,801	-				-0.0
1,948,821	+				+1.0
1,948,821	+				+1.2
1,948,826	+				+0.5
1,948,829	-				-0.2
1,948,833	-				+0.2
1,948,834	-				+1.0
1,948,850	+				-0.5
1,948,851	-				-1.9
1,948,868	+		Synpcc7942_1877	0.10	+1.0
1,948,870	-		Synpcc7942_1877	0.10	+0.4
1,948,876	-		Synpcc7942_1877	0.11	+1.7
1,948,893	+		Synpcc7942_1877	0.12	+0.6
1,948,893	+		Synpcc7942_1877	0.12	-1.2
1,948,901	-		Synpcc7942_1877	0.12	+1.3
1,948,901	-		Synpcc7942_1877	0.12	+0.1
1,948,901	-		Synpcc7942_1877	0.12	+0.7
1,948,901	-		Synpcc7942_1877	0.12	-0.6
1,948,901	-		Synpcc7942_1877	0.12	+0.2
1,948,908	+		Synpcc7942_1877	0.12	-1.4
1,948,908	+		Synpcc7942_1877	0.12	-2.2
1,948,916	-		Synpcc7942_1877	0.13	-2.6
1,948,916	-		Synpcc7942_1877	0.13	-1.6
1,948,920	-		Synpcc7942_1877	0.13	+1.6
1,948,927	+		Synpcc7942_1877	0.13	-1.2
1,948,957	+		Synpcc7942_1877	0.15	+1.6
1,948,965	-		Synpcc7942_1877	0.15	-0.8
1,948,975	+		Synpcc7942_1877	0.16	-1.0
1,948,990	+		Synpcc7942_1877	0.16	-0.8
1,948,990	+		Synpcc7942_1877	0.16	-0.4
1,948,990	+		Synpcc7942_1877	0.16	-1.3
1,948,998	-		Synpcc7942_1877	0.17	-1.9
1,948,998	-		Synpcc7942_1877	0.17	+0.4
1,948,998	-		Synpcc7942_1877	0.17	+0.0
1,949,004	+		Synpcc7942_1877	0.17	+0.6
1,949,013	+		Synpcc7942_1877	0.18	-0.3
1,949,020	-		Synpcc7942_1877	0.18	+0.4
1,949,020	-		Synpcc7942_1877	0.18	-1.6
1,949,021	-		Synpcc7942_1877	0.18	+0.3
1,949,021	-		Synpcc7942_1877	0.18	-0.1
1,949,081	-		Synpcc7942_1877	0.21	-1.4