Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1677

Experiment: BG11 with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BG11 with nitrate 100 mM
1,744,510	+		Synpcc7942_1675	0.47	+1.0
1,744,543	+		Synpcc7942_1675	0.54	-0.5
1,744,546	-		Synpcc7942_1675	0.55	-1.3
1,744,551	-		Synpcc7942_1675	0.56	-0.6
1,744,562	+		Synpcc7942_1675	0.58	-3.0
1,744,573	-		Synpcc7942_1675	0.60	-3.8
1,744,587	+		Synpcc7942_1675	0.63	-1.0
1,744,588	-		Synpcc7942_1675	0.63	-1.2
1,744,588	-		Synpcc7942_1675	0.63	-0.0
1,744,588	-		Synpcc7942_1675	0.63	+0.7
1,744,613	-		Synpcc7942_1675	0.68	-2.0
1,744,681	+		Synpcc7942_1675	0.82	+0.3
1,744,689	-		Synpcc7942_1675	0.84	-1.7
1,744,722	+				+1.0
1,744,741	+				-0.4
1,744,749	-				-0.5
1,744,766	+				-0.2
1,744,776	-				+4.8
1,744,776	-				-0.9
1,744,776	-				-1.6
1,744,791	-				-0.2
1,744,830	+				-0.2
1,744,830	+				-1.7
1,744,838	-				-0.4
1,744,846	+				-1.0
1,744,854	-				-1.2
1,744,863	-				-2.4
1,744,863	-				-1.0
1,744,891	+		Synpcc7942_1676	0.11	-0.8
1,744,891	+		Synpcc7942_1676	0.11	-0.5
1,744,900	+		Synpcc7942_1676	0.13	-0.0
1,744,908	-		Synpcc7942_1676	0.14	+0.9
1,744,908	-				-0.4
1,744,908	-		Synpcc7942_1676	0.14	+0.7
1,744,908	-		Synpcc7942_1676	0.14	-0.6
1,744,962	-		Synpcc7942_1676	0.22	-0.4
1,744,967	-		Synpcc7942_1676	0.23	+1.4
1,744,971	+		Synpcc7942_1676	0.24	+0.1
1,744,974	-		Synpcc7942_1676	0.24	-1.2
1,744,986	+		Synpcc7942_1676	0.26	+0.7
1,744,994	-		Synpcc7942_1676	0.27	-1.7
1,744,994	-		Synpcc7942_1676	0.27	-1.5
1,745,004	-		Synpcc7942_1676	0.29	-2.6
1,745,012	-		Synpcc7942_1676	0.30	-2.7
1,745,014	-		Synpcc7942_1676	0.30	-0.4
1,745,049	-		Synpcc7942_1676	0.36	-1.2
1,745,086	-		Synpcc7942_1676	0.41	+0.9
1,745,086	-		Synpcc7942_1676	0.41	+1.2
1,745,086	-		Synpcc7942_1676	0.41	-1.3
1,745,086	-		Synpcc7942_1676	0.41	-0.1
1,745,115	+		Synpcc7942_1676	0.46	-0.9
1,745,126	+				-0.6
1,745,134	-				+0.6
1,745,134	-		Synpcc7942_1676	0.49	-1.5
1,745,134	-		Synpcc7942_1676	0.49	-2.1
1,745,139	+		Synpcc7942_1676	0.49	+0.4
1,745,165	+		Synpcc7942_1676	0.53	-0.1
1,745,168	-		Synpcc7942_1676	0.54	+0.5
1,745,174	+		Synpcc7942_1676	0.55	-2.3
1,745,206	+		Synpcc7942_1676	0.60	+0.4
1,745,215	+		Synpcc7942_1676	0.61	+0.5
1,745,241	-		Synpcc7942_1676	0.65	-0.8
1,745,251	+		Synpcc7942_1676	0.67	-0.9
1,745,251	+		Synpcc7942_1676	0.67	-1.3
1,745,266	-		Synpcc7942_1676	0.69	+0.1
1,745,271	-		Synpcc7942_1676	0.70	-1.2
1,745,311	-		Synpcc7942_1676	0.76	-0.2
1,745,324	-				+0.4
1,745,345	-		Synpcc7942_1676	0.81	+0.3
1,745,363	+		Synpcc7942_1676	0.84	+0.4
1,745,378	+		Synpcc7942_1676	0.86	-1.3
1,745,398	-		Synpcc7942_1676	0.89	-2.3
1,745,405	+				-4.0
1,745,413	-				-3.4
1,745,413	-				+0.5
1,745,458	-				+0.4
1,745,476	+				-1.7
1,745,476	+				-2.2
1,745,476	+				-0.0
1,745,484	-				-1.4
1,745,511	-				-2.2
1,745,521	-				+0.4
1,745,521	-				+0.0
1,745,526	-				-0.5
1,745,534	+				-3.1
1,745,544	-				+3.0
1,745,544	-				-0.8
1,745,584	-				-1.9
1,745,586	-				-0.3
1,745,619	-		Synpcc7942_1677	0.11	-2.1
1,745,636	+		Synpcc7942_1677	0.12	-2.0
1,745,642	+		Synpcc7942_1677	0.13	+1.7
1,745,673	+		Synpcc7942_1677	0.16	-1.2
1,745,674	-		Synpcc7942_1677	0.16	-0.9
1,745,684	+		Synpcc7942_1677	0.17	-0.5
1,745,688	-		Synpcc7942_1677	0.17	-0.3
1,745,692	-		Synpcc7942_1677	0.17	-1.6
1,745,709	+		Synpcc7942_1677	0.19	-1.0
1,745,720	+		Synpcc7942_1677	0.20	+0.4
1,745,733	-		Synpcc7942_1677	0.21	-2.4
1,745,759	-		Synpcc7942_1677	0.24	-1.8
1,745,833	+		Synpcc7942_1677	0.30	-0.5
1,745,834	+		Synpcc7942_1677	0.30	-1.4
1,745,855	-		Synpcc7942_1677	0.32	+0.4
1,745,889	+		Synpcc7942_1677	0.35	-1.5
1,745,892	-		Synpcc7942_1677	0.36	-1.4
1,745,897	-		Synpcc7942_1677	0.36	+2.0
1,745,897	-		Synpcc7942_1677	0.36	-0.2
1,745,940	-		Synpcc7942_1677	0.40	-0.4
1,745,974	+		Synpcc7942_1677	0.43	-1.3
1,745,982	-				+0.6
1,746,079	-		Synpcc7942_1677	0.53	-0.1
1,746,104	+		Synpcc7942_1677	0.55	+0.5
1,746,118	+		Synpcc7942_1677	0.56	-1.9
1,746,136	+		Synpcc7942_1677	0.58	+0.4
1,746,140	-		Synpcc7942_1677	0.58	-0.6
1,746,169	+		Synpcc7942_1677	0.61	-0.8
1,746,191	+		Synpcc7942_1677	0.63	+1.0
1,746,208	-		Synpcc7942_1677	0.64	+1.5
1,746,210	+		Synpcc7942_1677	0.65	-0.5
1,746,210	+		Synpcc7942_1677	0.65	-2.0
1,746,210	+		Synpcc7942_1677	0.65	-0.9
1,746,210	+		Synpcc7942_1677	0.65	-1.4
1,746,210	+		Synpcc7942_1677	0.65	-2.6
1,746,210	+		Synpcc7942_1677	0.65	-1.7
1,746,210	+		Synpcc7942_1677	0.65	-2.9
1,746,213	-		Synpcc7942_1677	0.65	-0.1
1,746,218	-		Synpcc7942_1677	0.65	-0.4
1,746,218	-		Synpcc7942_1677	0.65	-1.4
1,746,218	-		Synpcc7942_1677	0.65	-1.1
1,746,218	-		Synpcc7942_1677	0.65	-1.9
1,746,218	-		Synpcc7942_1677	0.65	-1.3
1,746,218	-		Synpcc7942_1677	0.65	-1.6
1,746,218	-		Synpcc7942_1677	0.65	-0.9
1,746,218	-		Synpcc7942_1677	0.65	+0.5
1,746,228	+		Synpcc7942_1677	0.66	-3.0
1,746,228	-		Synpcc7942_1677	0.66	+0.2
1,746,235	+		Synpcc7942_1677	0.67	+0.2
1,746,268	-		Synpcc7942_1677	0.70	+0.1
1,746,270	+		Synpcc7942_1677	0.70	-0.0
1,746,273	-		Synpcc7942_1677	0.70	+0.3
1,746,306	+		Synpcc7942_1677	0.73	-1.0
1,746,306	+		Synpcc7942_1677	0.73	+0.5
1,746,323	-		Synpcc7942_1677	0.75	-0.0
1,746,324	+		Synpcc7942_1677	0.75	-0.4
1,746,332	-		Synpcc7942_1677	0.76	-0.8
1,746,333	-		Synpcc7942_1677	0.76	+0.8
1,746,337	-		Synpcc7942_1677	0.76	+0.8
1,746,381	+		Synpcc7942_1677	0.80	+1.1
1,746,389	-		Synpcc7942_1677	0.81	-0.0
1,746,429	+		Synpcc7942_1677	0.85	+0.1
1,746,451	+		Synpcc7942_1677	0.87	-2.0
1,746,451	+		Synpcc7942_1677	0.87	+0.3
1,746,451	+		Synpcc7942_1677	0.87	-1.9
1,746,451	+		Synpcc7942_1677	0.87	-1.5
1,746,459	-		Synpcc7942_1677	0.87	-0.6
1,746,459	-		Synpcc7942_1677	0.87	+0.2
1,746,459	-		Synpcc7942_1677	0.87	-0.2
1,746,459	-		Synpcc7942_1677	0.87	-0.4
1,746,459	-		Synpcc7942_1677	0.87	-1.8
1,746,459	-		Synpcc7942_1677	0.87	-1.6
1,746,459	-		Synpcc7942_1677	0.87	-0.9
1,746,459	-		Synpcc7942_1677	0.87	-0.4
1,746,459	-		Synpcc7942_1677	0.87	-0.6
1,746,527	+				+0.0
1,746,527	+				+0.5
1,746,535	-				+0.0
1,746,541	+				-0.6
1,746,542	-				-0.4
1,746,561	+				-0.9
1,746,575	+				+0.5
1,746,594	-				+0.7
1,746,609	+				+0.6
1,746,624	-				-0.1
1,746,624	-				-1.0
1,746,660	+				+0.8
1,746,725	+				-0.4
1,746,745	-		Synpcc7942_1678	0.25	-0.2
1,746,748	+		Synpcc7942_1678	0.25	-1.0
1,746,748	+		Synpcc7942_1678	0.25	-0.7
1,746,784	+		Synpcc7942_1678	0.32	+0.0
1,746,786	+		Synpcc7942_1678	0.32	+0.6
1,746,791	+		Synpcc7942_1678	0.33	-1.0
1,746,829	-		Synpcc7942_1678	0.40	-0.9
1,746,829	-		Synpcc7942_1678	0.40	-0.9
1,746,868	-		Synpcc7942_1678	0.47	+0.6
1,746,975	-		Synpcc7942_1678	0.67	-0.6
1,746,975	-		Synpcc7942_1678	0.67	+0.3
1,747,003	+		Synpcc7942_1678	0.72	+0.3
1,747,011	-		Synpcc7942_1678	0.74	-0.0
1,747,013	+				-0.0
1,747,016	-		Synpcc7942_1678	0.75	-2.1
1,747,021	-		Synpcc7942_1678	0.76	-0.3
1,747,064	+		Synpcc7942_1678	0.83	+0.1
1,747,083	+		Synpcc7942_1678	0.87	-1.8
1,747,083	+		Synpcc7942_1678	0.87	-0.4
1,747,083	+		Synpcc7942_1678	0.87	-2.5
1,747,083	+		Synpcc7942_1678	0.87	-0.3
1,747,083	+		Synpcc7942_1678	0.87	-2.0
1,747,089	-		Synpcc7942_1678	0.88	+2.0
1,747,091	-		Synpcc7942_1678	0.88	-2.0
1,747,103	-				-2.4
1,747,110	+				-0.0
1,747,110	+				-0.8
1,747,110	+				-1.0
1,747,116	+				-0.0
1,747,117	-				-0.3
1,747,118	-				-0.3
1,747,118	-				-0.9
1,747,119	-				-2.2
1,747,124	-				+2.1
1,747,129	-				+0.9
1,747,147	-				-0.5
1,747,147	-				-2.2
1,747,155	+				+0.2
1,747,155	+				-0.5
1,747,155	+				-0.2
1,747,155	+				-1.5
1,747,155	+				-0.0
1,747,155	+				+1.0
1,747,155	+				-0.6
1,747,155	+				+0.1
1,747,155	+				-0.6
1,747,155	+				-0.4
1,747,155	+				+0.7
1,747,155	+				-2.1
1,747,155	+				-1.7
1,747,155	+				+0.9
1,747,155	+				-1.3
1,747,155	+				-0.8
1,747,155	+				+1.0
1,747,155	+				+0.4
1,747,155	+				-1.0
1,747,160	+				-0.2
1,747,162	-				-0.5
1,747,163	-				-0.1
1,747,163	-				+0.7
1,747,163	-				+0.3
1,747,163	-				-1.3
1,747,163	-				-1.2
1,747,163	-				+0.7
1,747,163	-				-0.2
1,747,163	-				-0.0
1,747,163	-				-0.0
1,747,163	-				+1.4
1,747,163	-				-0.0
1,747,163	-				-0.0
1,747,163	-				+0.7
1,747,163	-				-0.4
1,747,163	-				-2.0
1,747,163	-				+0.4
1,747,163	-				-0.4
1,747,163	-				-0.4
1,747,163	-				+1.0
1,747,177	+				+1.0
1,747,201	-				+0.8
1,747,205	-				+1.5
1,747,209	+				-1.5
1,747,228	-				-0.5
1,747,246	+				-0.0
1,747,246	+				-0.4
1,747,317	-	psb28	Synpcc7942_1679	0.19	+1.6
1,747,330	+	psb28	Synpcc7942_1679	0.23	+0.8
1,747,330	+	psb28	Synpcc7942_1679	0.23	+1.6
1,747,356	-	psb28	Synpcc7942_1679	0.31	+0.7
1,747,363	-	psb28	Synpcc7942_1679	0.33	+1.1
1,747,363	-	psb28	Synpcc7942_1679	0.33	+0.7
1,747,365	+	psb28	Synpcc7942_1679	0.33	+2.3
1,747,365	+	psb28	Synpcc7942_1679	0.33	+1.8
1,747,373	-	psb28	Synpcc7942_1679	0.36	+0.9
1,747,373	-	psb28	Synpcc7942_1679	0.36	-0.2
1,747,374	-	psb28	Synpcc7942_1679	0.36	+0.3
1,747,390	+	psb28	Synpcc7942_1679	0.41	+1.5
1,747,413	-	psb28	Synpcc7942_1679	0.47	+1.5
1,747,414	-	psb28	Synpcc7942_1679	0.48	+1.9
1,747,576	-				-0.1
1,747,585	+				-1.2
1,747,585	+				+0.1
1,747,593	+				+1.0
1,747,593	+				+0.1
1,747,593	+				-2.7
1,747,593	-				+1.3
1,747,593	-				-0.7
1,747,593	-				-1.6