Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0694

Experiment: BG11 with nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0692 and Synpcc7942_0693 are separated by 61 nucleotidesSynpcc7942_0693 and rps1 are separated by 52 nucleotidesrps1 and Synpcc7942_0695 are separated by 277 nucleotidesSynpcc7942_0695 and psbT are separated by 209 nucleotides Synpcc7942_0692: Synpcc7942_0692 - hypothetical protein, at 685,631 to 686,185 _0692 Synpcc7942_0693: Synpcc7942_0693 - hypothetical protein, at 686,247 to 687,080 _0693 Synpcc7942_0694: rps1 - 30S ribosomal protein S1, at 687,133 to 688,056 rps1 Synpcc7942_0695: Synpcc7942_0695 - hypothetical protein, at 688,334 to 688,840 _0695 Synpcc7942_0696: psbT - photosystem II reaction center protein T, at 689,050 to 689,145 psbT Position (kb) 687 688 689Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 686.138 kb on - strandat 686.138 kb on - strandat 686.139 kb on - strandat 686.140 kb on - strandat 686.164 kb on - strandat 686.168 kb on + strandat 686.189 kb on + strandat 686.189 kb on + strandat 686.189 kb on + strandat 686.196 kb on - strandat 686.197 kb on - strandat 686.203 kb on - strandat 686.214 kb on + strandat 686.224 kb on - strandat 686.254 kb on + strandat 686.345 kb on + strand, within Synpcc7942_0693at 686.355 kb on + strand, within Synpcc7942_0693at 686.449 kb on + strand, within Synpcc7942_0693at 686.457 kb on - strand, within Synpcc7942_0693at 686.469 kb on + strand, within Synpcc7942_0693at 686.491 kb on + strand, within Synpcc7942_0693at 686.576 kb on - strand, within Synpcc7942_0693at 686.576 kb on - strandat 686.585 kb on + strand, within Synpcc7942_0693at 686.669 kb on - strand, within Synpcc7942_0693at 686.679 kb on - strand, within Synpcc7942_0693at 686.728 kb on - strand, within Synpcc7942_0693at 686.728 kb on - strand, within Synpcc7942_0693at 686.739 kb on + strand, within Synpcc7942_0693at 686.748 kb on - strand, within Synpcc7942_0693at 686.753 kb on - strand, within Synpcc7942_0693at 686.840 kb on + strand, within Synpcc7942_0693at 686.852 kb on + strand, within Synpcc7942_0693at 686.893 kb on + strand, within Synpcc7942_0693at 686.904 kb on + strand, within Synpcc7942_0693at 686.904 kb on + strand, within Synpcc7942_0693at 686.912 kb on - strand, within Synpcc7942_0693at 686.919 kb on + strand, within Synpcc7942_0693at 686.935 kb on + strand, within Synpcc7942_0693at 686.946 kb on + strand, within Synpcc7942_0693at 686.947 kb on + strand, within Synpcc7942_0693at 686.954 kb on - strand, within Synpcc7942_0693at 686.955 kb on - strand, within Synpcc7942_0693at 686.970 kb on + strand, within Synpcc7942_0693at 686.970 kb on + strand, within Synpcc7942_0693at 686.983 kb on - strand, within Synpcc7942_0693at 686.998 kb on + strandat 686.998 kb on + strandat 687.033 kb on + strandat 687.038 kb on + strandat 687.046 kb on + strandat 687.054 kb on - strandat 687.063 kb on + strandat 687.148 kb on - strandat 688.236 kb on + strandat 688.365 kb on + strandat 688.386 kb on + strand, within Synpcc7942_0695at 688.434 kb on + strand, within Synpcc7942_0695at 688.442 kb on - strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strandat 688.552 kb on + strand, within Synpcc7942_0695at 688.558 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.571 kb on - strand, within Synpcc7942_0695at 688.622 kb on + strand, within Synpcc7942_0695at 688.627 kb on + strand, within Synpcc7942_0695at 688.692 kb on - strand, within Synpcc7942_0695at 688.722 kb on + strand, within Synpcc7942_0695at 688.759 kb on - strand, within Synpcc7942_0695at 688.760 kb on + strand, within Synpcc7942_0695at 688.787 kb on - strand, within Synpcc7942_0695at 688.788 kb on - strand, within Synpcc7942_0695at 688.825 kb on + strandat 688.871 kb on + strandat 689.018 kb on - strandat 689.021 kb on + strandat 689.021 kb on + strandat 689.028 kb on + strandat 689.029 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with nitrate 100 mM
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686,138 - -0.9
686,138 - +0.4
686,139 - -1.1
686,140 - +1.9
686,164 - +0.8
686,168 + -0.7
686,189 + -0.6
686,189 + -2.9
686,189 + -2.1
686,196 - -2.0
686,197 - -1.5
686,203 - +0.7
686,214 + -0.0
686,224 - -0.6
686,254 + +1.5
686,345 + Synpcc7942_0693 0.12 +2.8
686,355 + Synpcc7942_0693 0.13 +1.8
686,449 + Synpcc7942_0693 0.24 +2.3
686,457 - Synpcc7942_0693 0.25 +0.1
686,469 + Synpcc7942_0693 0.27 +0.7
686,491 + Synpcc7942_0693 0.29 +2.4
686,576 - Synpcc7942_0693 0.39 +0.8
686,576 - +4.9
686,585 + Synpcc7942_0693 0.41 +2.4
686,669 - Synpcc7942_0693 0.51 +1.8
686,679 - Synpcc7942_0693 0.52 +1.4
686,728 - Synpcc7942_0693 0.58 +2.1
686,728 - Synpcc7942_0693 0.58 -0.1
686,739 + Synpcc7942_0693 0.59 +0.5
686,748 - Synpcc7942_0693 0.60 +2.4
686,753 - Synpcc7942_0693 0.61 +1.3
686,840 + Synpcc7942_0693 0.71 +1.6
686,852 + Synpcc7942_0693 0.73 +3.6
686,893 + Synpcc7942_0693 0.77 +2.6
686,904 + Synpcc7942_0693 0.79 +1.7
686,904 + Synpcc7942_0693 0.79 +0.7
686,912 - Synpcc7942_0693 0.80 +1.3
686,919 + Synpcc7942_0693 0.81 +2.8
686,935 + Synpcc7942_0693 0.82 +3.5
686,946 + Synpcc7942_0693 0.84 +1.3
686,947 + Synpcc7942_0693 0.84 +1.9
686,954 - Synpcc7942_0693 0.85 +2.6
686,955 - Synpcc7942_0693 0.85 +1.8
686,970 + Synpcc7942_0693 0.87 +1.5
686,970 + Synpcc7942_0693 0.87 +1.4
686,983 - Synpcc7942_0693 0.88 +1.1
686,998 + -0.4
686,998 + -0.9
687,033 + +1.9
687,038 + -0.7
687,046 + -1.9
687,054 - +0.2
687,063 + -0.0
687,148 - -1.1
688,236 + -1.4
688,365 + -1.7
688,386 + Synpcc7942_0695 0.10 -1.9
688,434 + Synpcc7942_0695 0.20 -0.8
688,442 - Synpcc7942_0695 0.21 +0.5
688,552 + Synpcc7942_0695 0.43 -1.3
688,552 + Synpcc7942_0695 0.43 -1.9
688,552 + Synpcc7942_0695 0.43 -1.3
688,552 + Synpcc7942_0695 0.43 -2.6
688,552 + Synpcc7942_0695 0.43 -0.9
688,552 + Synpcc7942_0695 0.43 -1.6
688,552 + Synpcc7942_0695 0.43 -2.1
688,552 + Synpcc7942_0695 0.43 -1.3
688,552 + Synpcc7942_0695 0.43 +0.5
688,552 + Synpcc7942_0695 0.43 -1.7
688,552 + -0.3
688,552 + Synpcc7942_0695 0.43 -2.7
688,558 - Synpcc7942_0695 0.44 -0.9
688,560 - Synpcc7942_0695 0.45 -1.3
688,560 - Synpcc7942_0695 0.45 -0.8
688,560 - Synpcc7942_0695 0.45 -0.1
688,560 - Synpcc7942_0695 0.45 -1.3
688,560 - Synpcc7942_0695 0.45 -0.6
688,560 - Synpcc7942_0695 0.45 -1.9
688,560 - Synpcc7942_0695 0.45 -0.3
688,560 - Synpcc7942_0695 0.45 -2.1
688,560 - Synpcc7942_0695 0.45 -0.1
688,571 - Synpcc7942_0695 0.47 -1.1
688,622 + Synpcc7942_0695 0.57 +2.1
688,627 + Synpcc7942_0695 0.58 -0.4
688,692 - Synpcc7942_0695 0.71 -0.8
688,722 + Synpcc7942_0695 0.77 +0.5
688,759 - Synpcc7942_0695 0.84 -2.0
688,760 + Synpcc7942_0695 0.84 +0.1
688,787 - Synpcc7942_0695 0.89 -0.9
688,788 - Synpcc7942_0695 0.90 +0.7
688,825 + +1.1
688,871 + +0.5
689,018 - +0.9
689,021 + +4.4
689,021 + -1.3
689,028 + +1.8
689,029 - +1.3

Or see this region's nucleotide sequence