Experiment: Nitrate reduction, replicate B t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5452 and Pf1N1B4_5453 are separated by 30 nucleotides Pf1N1B4_5453 and Pf1N1B4_5454 are separated by 704 nucleotides
Pf1N1B4_5452 - hypothetical protein, at 199,278 to 199,538
_5452
Pf1N1B4_5453 - hypothetical protein, at 199,569 to 199,898
_5453
Pf1N1B4_5454 - hypothetical protein, at 200,603 to 200,998
_5454
Position (kb) 199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 198.635 kb on + strand at 198.636 kb on - strand at 198.636 kb on - strand at 198.661 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.793 kb on + strand at 198.793 kb on + strand at 198.793 kb on + strand at 198.793 kb on + strand at 198.793 kb on + strand at 198.794 kb on - strand at 198.895 kb on - strand at 198.981 kb on + strand at 198.982 kb on - strand at 198.982 kb on - strand at 199.101 kb on + strand at 199.101 kb on + strand at 199.101 kb on + strand at 199.130 kb on + strand at 199.130 kb on + strand at 199.130 kb on + strand at 199.148 kb on + strand at 199.148 kb on + strand at 199.148 kb on + strand at 199.149 kb on - strand at 199.163 kb on + strand at 199.163 kb on + strand at 199.187 kb on + strand at 199.187 kb on + strand at 199.187 kb on + strand at 199.189 kb on + strand at 199.189 kb on + strand at 199.213 kb on + strand at 199.239 kb on + strand at 199.249 kb on - strand at 199.249 kb on - strand at 199.354 kb on + strand at 199.355 kb on - strand, within Pf1N1B4_5452 at 199.355 kb on - strand, within Pf1N1B4_5452 at 199.366 kb on - strand, within Pf1N1B4_5452 at 199.367 kb on + strand, within Pf1N1B4_5452 at 199.367 kb on + strand, within Pf1N1B4_5452 at 199.367 kb on + strand, within Pf1N1B4_5452 at 199.436 kb on + strand, within Pf1N1B4_5452 at 199.437 kb on - strand, within Pf1N1B4_5452 at 199.437 kb on - strand, within Pf1N1B4_5452 at 199.437 kb on - strand, within Pf1N1B4_5452 at 199.469 kb on - strand, within Pf1N1B4_5452 at 199.469 kb on - strand, within Pf1N1B4_5452 at 199.473 kb on + strand, within Pf1N1B4_5452 at 199.474 kb on - strand, within Pf1N1B4_5452 at 199.539 kb on + strand at 199.576 kb on - strand at 199.670 kb on - strand, within Pf1N1B4_5453 at 199.830 kb on - strand, within Pf1N1B4_5453 at 199.830 kb on - strand, within Pf1N1B4_5453 at 199.830 kb on - strand, within Pf1N1B4_5453 at 199.840 kb on + strand, within Pf1N1B4_5453 at 199.841 kb on - strand, within Pf1N1B4_5453 at 199.841 kb on - strand, within Pf1N1B4_5453 at 199.841 kb on - strand, within Pf1N1B4_5453 at 199.844 kb on + strand, within Pf1N1B4_5453 at 199.845 kb on - strand, within Pf1N1B4_5453 at 199.888 kb on - strand at 199.896 kb on + strand at 199.896 kb on + strand at 199.896 kb on + strand at 199.896 kb on + strand at 200.046 kb on - strand at 200.249 kb on - strand at 200.263 kb on + strand at 200.264 kb on - strand at 200.264 kb on - strand at 200.286 kb on + strand at 200.287 kb on - strand at 200.287 kb on - strand at 200.287 kb on - strand at 200.287 kb on - strand at 200.287 kb on - strand at 200.287 kb on - strand at 200.287 kb on - strand at 200.287 kb on - strand at 200.287 kb on - strand at 200.314 kb on + strand at 200.314 kb on + strand at 200.314 kb on + strand at 200.314 kb on + strand at 200.314 kb on + strand at 200.314 kb on + strand at 200.314 kb on + strand at 200.315 kb on - strand at 200.315 kb on - strand at 200.315 kb on - strand at 200.315 kb on - strand at 200.363 kb on + strand at 200.363 kb on + strand at 200.363 kb on + strand at 200.395 kb on + strand at 200.416 kb on + strand at 200.416 kb on + strand at 200.416 kb on + strand at 200.416 kb on + strand at 200.416 kb on + strand at 200.416 kb on + strand at 200.416 kb on + strand at 200.442 kb on - strand at 200.496 kb on + strand at 200.496 kb on + strand at 200.496 kb on + strand at 200.497 kb on - strand at 200.497 kb on - strand at 200.604 kb on + strand at 200.609 kb on - strand at 200.699 kb on + strand, within Pf1N1B4_5454 at 200.700 kb on - strand, within Pf1N1B4_5454 at 200.753 kb on + strand, within Pf1N1B4_5454 at 200.753 kb on + strand at 200.753 kb on + strand, within Pf1N1B4_5454 at 200.754 kb on - strand, within Pf1N1B4_5454 at 200.754 kb on - strand, within Pf1N1B4_5454 at 200.754 kb on - strand, within Pf1N1B4_5454 at 200.769 kb on + strand, within Pf1N1B4_5454 at 200.770 kb on - strand, within Pf1N1B4_5454 at 200.770 kb on - strand, within Pf1N1B4_5454 at 200.824 kb on - strand, within Pf1N1B4_5454 at 200.824 kb on - strand, within Pf1N1B4_5454
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B t1 remove 198,635 + -1.6 198,636 - -1.6 198,636 - -0.5 198,661 + -2.4 198,709 + -0.0 198,709 + -0.0 198,793 + +0.0 198,793 + -0.0 198,793 + -2.9 198,793 + -1.2 198,793 + -2.0 198,794 - -0.0 198,895 - -1.6 198,981 + -1.2 198,982 - -0.0 198,982 - -0.0 199,101 + -0.0 199,101 + -1.5 199,101 + -0.0 199,130 + -1.1 199,130 + -0.0 199,130 + -0.0 199,148 + -0.0 199,148 + -2.1 199,148 + -0.0 199,149 - -2.9 199,163 + +0.4 199,163 + -0.0 199,187 + -1.5 199,187 + -3.1 199,187 + -0.8 199,189 + -1.0 199,189 + -1.4 199,213 + -1.4 199,239 + -1.5 199,249 - -0.0 199,249 - -1.1 199,354 + -0.2 199,355 - Pf1N1B4_5452 0.30 -1.3 199,355 - Pf1N1B4_5452 0.30 -0.0 199,366 - Pf1N1B4_5452 0.34 -0.0 199,367 + Pf1N1B4_5452 0.34 -1.8 199,367 + Pf1N1B4_5452 0.34 -1.9 199,367 + Pf1N1B4_5452 0.34 -0.0 199,436 + Pf1N1B4_5452 0.61 -1.9 199,437 - Pf1N1B4_5452 0.61 -0.0 199,437 - Pf1N1B4_5452 0.61 -1.7 199,437 - Pf1N1B4_5452 0.61 -0.0 199,469 - Pf1N1B4_5452 0.73 -0.0 199,469 - Pf1N1B4_5452 0.73 -2.1 199,473 + Pf1N1B4_5452 0.75 -0.0 199,474 - Pf1N1B4_5452 0.75 -1.5 199,539 + -0.0 199,576 - -0.0 199,670 - Pf1N1B4_5453 0.31 -0.0 199,830 - Pf1N1B4_5453 0.79 -1.3 199,830 - Pf1N1B4_5453 0.79 -0.8 199,830 - Pf1N1B4_5453 0.79 -0.0 199,840 + Pf1N1B4_5453 0.82 -0.0 199,841 - Pf1N1B4_5453 0.82 -0.0 199,841 - Pf1N1B4_5453 0.82 +0.2 199,841 - Pf1N1B4_5453 0.82 -1.3 199,844 + Pf1N1B4_5453 0.83 -0.0 199,845 - Pf1N1B4_5453 0.84 -0.0 199,888 - -1.6 199,896 + -0.0 199,896 + -0.0 199,896 + -0.0 199,896 + -2.0 200,046 - -2.2 200,249 - -0.0 200,263 + -2.0 200,264 - -0.0 200,264 - -0.0 200,286 + -1.5 200,287 - -1.0 200,287 - -0.0 200,287 - -2.1 200,287 - -0.8 200,287 - -1.3 200,287 - -2.0 200,287 - -0.0 200,287 - -1.5 200,287 - -1.7 200,314 + -0.0 200,314 + -0.0 200,314 + -1.9 200,314 + -0.0 200,314 + -1.1 200,314 + -0.0 200,314 + -0.0 200,315 - -0.0 200,315 - +0.3 200,315 - -0.0 200,315 - -0.0 200,363 + -0.0 200,363 + -0.0 200,363 + -0.0 200,395 + -2.6 200,416 + -2.9 200,416 + -2.2 200,416 + -0.0 200,416 + -2.2 200,416 + -1.3 200,416 + -0.0 200,416 + -0.0 200,442 - -0.0 200,496 + -0.0 200,496 + -1.3 200,496 + -0.0 200,497 - -0.0 200,497 - -0.0 200,604 + -0.0 200,609 - -0.0 200,699 + Pf1N1B4_5454 0.24 -0.9 200,700 - Pf1N1B4_5454 0.24 +0.2 200,753 + Pf1N1B4_5454 0.38 -0.0 200,753 + -1.2 200,753 + Pf1N1B4_5454 0.38 -0.0 200,754 - Pf1N1B4_5454 0.38 -1.6 200,754 - Pf1N1B4_5454 0.38 -1.3 200,754 - Pf1N1B4_5454 0.38 -0.3 200,769 + Pf1N1B4_5454 0.42 -2.0 200,770 - Pf1N1B4_5454 0.42 -0.8 200,770 - Pf1N1B4_5454 0.42 -0.0 200,824 - Pf1N1B4_5454 0.56 -0.0 200,824 - Pf1N1B4_5454 0.56 -2.6
Or see this region's nucleotide sequence