Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2968

Experiment: Nitrate reduction, replicate B t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2966 and Pf1N1B4_2967 are separated by 145 nucleotidesPf1N1B4_2967 and Pf1N1B4_2968 are separated by 24 nucleotidesPf1N1B4_2968 and Pf1N1B4_2969 are separated by 90 nucleotides Pf1N1B4_2966 - FIG00958649: hypothetical protein, at 3,327,726 to 3,328,160 _2966 Pf1N1B4_2967 - Alpha/beta hydrolase, at 3,328,306 to 3,328,938 _2967 Pf1N1B4_2968 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 3,328,963 to 3,330,318 _2968 Pf1N1B4_2969 - ATPase, AFG1 family, at 3,330,409 to 3,331,503 _2969 Position (kb) 3328 3329 3330 3331Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3328.009 kb on + strand, within Pf1N1B4_2966at 3328.174 kb on - strandat 3328.174 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.216 kb on + strandat 3328.217 kb on - strandat 3328.217 kb on - strandat 3328.219 kb on - strandat 3328.238 kb on - strandat 3328.238 kb on - strandat 3328.260 kb on + strandat 3328.323 kb on - strandat 3328.323 kb on - strandat 3328.360 kb on + strandat 3328.360 kb on + strandat 3328.361 kb on - strandat 3328.488 kb on + strand, within Pf1N1B4_2967at 3328.489 kb on - strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.816 kb on + strand, within Pf1N1B4_2967at 3328.816 kb on + strandat 3330.371 kb on - strandat 3330.409 kb on - strandat 3330.409 kb on - strandat 3330.409 kb on - strandat 3330.409 kb on - strandat 3330.409 kb on - strandat 3330.409 kb on - strandat 3330.409 kb on - strandat 3330.419 kb on + strandat 3330.419 kb on + strandat 3330.419 kb on + strandat 3330.420 kb on - strandat 3330.420 kb on - strandat 3330.420 kb on - strandat 3330.420 kb on - strandat 3330.420 kb on - strandat 3330.420 kb on - strandat 3330.505 kb on + strandat 3330.505 kb on + strandat 3330.505 kb on + strandat 3330.505 kb on + strandat 3330.505 kb on + strandat 3330.506 kb on - strandat 3330.506 kb on - strandat 3330.595 kb on + strand, within Pf1N1B4_2969at 3330.595 kb on + strand, within Pf1N1B4_2969at 3330.595 kb on + strand, within Pf1N1B4_2969at 3330.595 kb on + strand, within Pf1N1B4_2969at 3330.595 kb on + strand, within Pf1N1B4_2969at 3330.595 kb on + strand, within Pf1N1B4_2969at 3330.595 kb on + strand, within Pf1N1B4_2969at 3330.595 kb on + strand, within Pf1N1B4_2969at 3330.596 kb on - strand, within Pf1N1B4_2969at 3330.596 kb on - strand, within Pf1N1B4_2969at 3330.596 kb on - strand, within Pf1N1B4_2969at 3330.596 kb on - strand, within Pf1N1B4_2969at 3330.596 kb on - strand, within Pf1N1B4_2969at 3330.596 kb on - strand, within Pf1N1B4_2969at 3330.596 kb on - strand, within Pf1N1B4_2969at 3330.596 kb on - strand, within Pf1N1B4_2969at 3330.596 kb on - strand, within Pf1N1B4_2969at 3330.596 kb on - strand, within Pf1N1B4_2969at 3330.596 kb on - strand, within Pf1N1B4_2969at 3330.596 kb on - strand, within Pf1N1B4_2969at 3330.628 kb on + strand, within Pf1N1B4_2969at 3330.628 kb on + strand, within Pf1N1B4_2969at 3330.628 kb on + strand, within Pf1N1B4_2969at 3330.628 kb on + strand, within Pf1N1B4_2969at 3330.628 kb on + strand, within Pf1N1B4_2969at 3330.628 kb on + strand, within Pf1N1B4_2969at 3330.628 kb on + strand, within Pf1N1B4_2969at 3330.628 kb on + strand, within Pf1N1B4_2969at 3330.628 kb on + strand, within Pf1N1B4_2969at 3330.628 kb on + strand, within Pf1N1B4_2969at 3330.628 kb on + strand, within Pf1N1B4_2969at 3330.628 kb on + strand, within Pf1N1B4_2969at 3330.628 kb on + strand, within Pf1N1B4_2969at 3330.628 kb on + strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.629 kb on - strand, within Pf1N1B4_2969at 3330.916 kb on + strand, within Pf1N1B4_2969at 3330.916 kb on + strand, within Pf1N1B4_2969at 3330.916 kb on + strand, within Pf1N1B4_2969at 3330.916 kb on + strand, within Pf1N1B4_2969at 3330.916 kb on + strand, within Pf1N1B4_2969at 3330.916 kb on + strand, within Pf1N1B4_2969at 3330.916 kb on + strandat 3330.916 kb on + strand, within Pf1N1B4_2969at 3330.916 kb on + strand, within Pf1N1B4_2969at 3330.916 kb on + strand, within Pf1N1B4_2969at 3330.916 kb on + strand, within Pf1N1B4_2969at 3330.917 kb on - strand, within Pf1N1B4_2969at 3330.917 kb on - strand, within Pf1N1B4_2969at 3330.917 kb on - strand, within Pf1N1B4_2969at 3330.917 kb on - strand, within Pf1N1B4_2969at 3330.917 kb on - strand, within Pf1N1B4_2969at 3330.917 kb on - strand, within Pf1N1B4_2969at 3330.917 kb on - strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strandat 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.136 kb on + strand, within Pf1N1B4_2969at 3331.137 kb on - strand, within Pf1N1B4_2969at 3331.137 kb on - strand, within Pf1N1B4_2969at 3331.137 kb on - strand, within Pf1N1B4_2969at 3331.137 kb on - strand, within Pf1N1B4_2969at 3331.137 kb on - strand, within Pf1N1B4_2969at 3331.137 kb on - strand, within Pf1N1B4_2969at 3331.137 kb on - strand, within Pf1N1B4_2969at 3331.137 kb on - strand, within Pf1N1B4_2969at 3331.137 kb on - strand, within Pf1N1B4_2969at 3331.137 kb on - strand, within Pf1N1B4_2969at 3331.137 kb on - strand, within Pf1N1B4_2969at 3331.137 kb on - strand, within Pf1N1B4_2969at 3331.240 kb on + strand, within Pf1N1B4_2969at 3331.240 kb on + strand, within Pf1N1B4_2969at 3331.240 kb on + strandat 3331.240 kb on + strand, within Pf1N1B4_2969at 3331.240 kb on + strand, within Pf1N1B4_2969at 3331.240 kb on + strand, within Pf1N1B4_2969at 3331.240 kb on + strand, within Pf1N1B4_2969at 3331.240 kb on + strand, within Pf1N1B4_2969at 3331.240 kb on + strand, within Pf1N1B4_2969at 3331.240 kb on + strand, within Pf1N1B4_2969at 3331.241 kb on - strand, within Pf1N1B4_2969at 3331.241 kb on - strand, within Pf1N1B4_2969at 3331.241 kb on - strand, within Pf1N1B4_2969at 3331.241 kb on - strand, within Pf1N1B4_2969at 3331.241 kb on - strand, within Pf1N1B4_2969at 3331.241 kb on - strand, within Pf1N1B4_2969at 3331.241 kb on - strand, within Pf1N1B4_2969

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B t1
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3,328,009 + Pf1N1B4_2966 0.65 +0.0
3,328,174 - -2.4
3,328,174 - +0.0
3,328,191 - -2.2
3,328,191 - +0.0
3,328,191 - -1.2
3,328,191 - +0.0
3,328,191 - -2.4
3,328,191 - +0.0
3,328,216 + +0.0
3,328,217 - -1.0
3,328,217 - -0.9
3,328,219 - -2.3
3,328,238 - +0.0
3,328,238 - +0.0
3,328,260 + -2.6
3,328,323 - +0.0
3,328,323 - +0.0
3,328,360 + +0.0
3,328,360 + +0.0
3,328,361 - +0.0
3,328,488 + Pf1N1B4_2967 0.29 +0.0
3,328,489 - Pf1N1B4_2967 0.29 -3.4
3,328,761 + Pf1N1B4_2967 0.72 -0.9
3,328,761 + Pf1N1B4_2967 0.72 +0.0
3,328,761 + Pf1N1B4_2967 0.72 +0.0
3,328,761 + Pf1N1B4_2967 0.72 +0.0
3,328,761 + Pf1N1B4_2967 0.72 +0.0
3,328,761 + Pf1N1B4_2967 0.72 -2.6
3,328,761 + Pf1N1B4_2967 0.72 -1.1
3,328,761 + Pf1N1B4_2967 0.72 +0.0
3,328,762 - Pf1N1B4_2967 0.72 +0.0
3,328,762 - Pf1N1B4_2967 0.72 +0.0
3,328,762 - Pf1N1B4_2967 0.72 +0.0
3,328,762 - Pf1N1B4_2967 0.72 +0.0
3,328,762 - Pf1N1B4_2967 0.72 -3.7
3,328,762 - Pf1N1B4_2967 0.72 +0.0
3,328,762 - Pf1N1B4_2967 0.72 +0.0
3,328,762 - Pf1N1B4_2967 0.72 -3.2
3,328,762 - Pf1N1B4_2967 0.72 +0.0
3,328,762 - Pf1N1B4_2967 0.72 -2.7
3,328,762 - Pf1N1B4_2967 0.72 -2.5
3,328,816 + Pf1N1B4_2967 0.81 +0.0
3,328,816 + +0.0
3,330,371 - -2.0
3,330,409 - -1.6
3,330,409 - +0.0
3,330,409 - -3.0
3,330,409 - -2.0
3,330,409 - -2.2
3,330,409 - -2.7
3,330,409 - +0.0
3,330,419 + +0.0
3,330,419 + -1.6
3,330,419 + +0.0
3,330,420 - -1.6
3,330,420 - +0.0
3,330,420 - -3.7
3,330,420 - +0.0
3,330,420 - -2.1
3,330,420 - -1.6
3,330,505 + -0.6
3,330,505 + -2.6
3,330,505 + +0.0
3,330,505 + +0.0
3,330,505 + +0.0
3,330,506 - +0.0
3,330,506 - +0.0
3,330,595 + Pf1N1B4_2969 0.17 -2.5
3,330,595 + Pf1N1B4_2969 0.17 +0.0
3,330,595 + Pf1N1B4_2969 0.17 -1.5
3,330,595 + Pf1N1B4_2969 0.17 +0.0
3,330,595 + Pf1N1B4_2969 0.17 +0.0
3,330,595 + Pf1N1B4_2969 0.17 +0.0
3,330,595 + Pf1N1B4_2969 0.17 -2.0
3,330,595 + Pf1N1B4_2969 0.17 -1.6
3,330,596 - Pf1N1B4_2969 0.17 +0.0
3,330,596 - Pf1N1B4_2969 0.17 -2.0
3,330,596 - Pf1N1B4_2969 0.17 +0.0
3,330,596 - Pf1N1B4_2969 0.17 +0.0
3,330,596 - Pf1N1B4_2969 0.17 +0.0
3,330,596 - Pf1N1B4_2969 0.17 -1.6
3,330,596 - Pf1N1B4_2969 0.17 +2.0
3,330,596 - Pf1N1B4_2969 0.17 +0.0
3,330,596 - Pf1N1B4_2969 0.17 -1.6
3,330,596 - Pf1N1B4_2969 0.17 -1.0
3,330,596 - Pf1N1B4_2969 0.17 -0.6
3,330,596 - Pf1N1B4_2969 0.17 +0.0
3,330,628 + Pf1N1B4_2969 0.20 -2.2
3,330,628 + Pf1N1B4_2969 0.20 -1.6
3,330,628 + Pf1N1B4_2969 0.20 -1.0
3,330,628 + Pf1N1B4_2969 0.20 +0.0
3,330,628 + Pf1N1B4_2969 0.20 +0.0
3,330,628 + Pf1N1B4_2969 0.20 +0.0
3,330,628 + Pf1N1B4_2969 0.20 -1.6
3,330,628 + Pf1N1B4_2969 0.20 -1.6
3,330,628 + Pf1N1B4_2969 0.20 -1.2
3,330,628 + Pf1N1B4_2969 0.20 +0.0
3,330,628 + Pf1N1B4_2969 0.20 -2.8
3,330,628 + Pf1N1B4_2969 0.20 -2.3
3,330,628 + Pf1N1B4_2969 0.20 -3.2
3,330,628 + Pf1N1B4_2969 0.20 +0.0
3,330,629 - Pf1N1B4_2969 0.20 -1.9
3,330,629 - Pf1N1B4_2969 0.20 +0.0
3,330,629 - Pf1N1B4_2969 0.20 +0.0
3,330,629 - Pf1N1B4_2969 0.20 +0.0
3,330,629 - Pf1N1B4_2969 0.20 +0.0
3,330,629 - Pf1N1B4_2969 0.20 -2.0
3,330,629 - Pf1N1B4_2969 0.20 -1.6
3,330,629 - Pf1N1B4_2969 0.20 -1.7
3,330,629 - Pf1N1B4_2969 0.20 +0.0
3,330,629 - Pf1N1B4_2969 0.20 +0.0
3,330,629 - Pf1N1B4_2969 0.20 -2.3
3,330,629 - Pf1N1B4_2969 0.20 +0.0
3,330,629 - Pf1N1B4_2969 0.20 -1.6
3,330,629 - Pf1N1B4_2969 0.20 -2.8
3,330,629 - Pf1N1B4_2969 0.20 -1.6
3,330,629 - Pf1N1B4_2969 0.20 -2.0
3,330,629 - Pf1N1B4_2969 0.20 -1.7
3,330,916 + Pf1N1B4_2969 0.46 -3.3
3,330,916 + Pf1N1B4_2969 0.46 -3.0
3,330,916 + Pf1N1B4_2969 0.46 -1.6
3,330,916 + Pf1N1B4_2969 0.46 +0.0
3,330,916 + Pf1N1B4_2969 0.46 -0.9
3,330,916 + Pf1N1B4_2969 0.46 +0.0
3,330,916 + -1.6
3,330,916 + Pf1N1B4_2969 0.46 -1.0
3,330,916 + Pf1N1B4_2969 0.46 -0.7
3,330,916 + Pf1N1B4_2969 0.46 -2.8
3,330,916 + Pf1N1B4_2969 0.46 +0.0
3,330,917 - Pf1N1B4_2969 0.46 +0.0
3,330,917 - Pf1N1B4_2969 0.46 -2.8
3,330,917 - Pf1N1B4_2969 0.46 -0.9
3,330,917 - Pf1N1B4_2969 0.46 +0.0
3,330,917 - Pf1N1B4_2969 0.46 -2.4
3,330,917 - Pf1N1B4_2969 0.46 +0.0
3,330,917 - Pf1N1B4_2969 0.46 +0.0
3,331,136 + Pf1N1B4_2969 0.66 -1.6
3,331,136 + Pf1N1B4_2969 0.66 -2.3
3,331,136 + Pf1N1B4_2969 0.66 -1.1
3,331,136 + Pf1N1B4_2969 0.66 -2.1
3,331,136 + Pf1N1B4_2969 0.66 +0.0
3,331,136 + Pf1N1B4_2969 0.66 +0.0
3,331,136 + Pf1N1B4_2969 0.66 +0.0
3,331,136 + Pf1N1B4_2969 0.66 -1.7
3,331,136 + Pf1N1B4_2969 0.66 -1.6
3,331,136 + Pf1N1B4_2969 0.66 -1.4
3,331,136 + Pf1N1B4_2969 0.66 +0.0
3,331,136 + Pf1N1B4_2969 0.66 -1.9
3,331,136 + Pf1N1B4_2969 0.66 +0.0
3,331,136 + Pf1N1B4_2969 0.66 +0.0
3,331,136 + Pf1N1B4_2969 0.66 -1.8
3,331,136 + Pf1N1B4_2969 0.66 +0.0
3,331,136 + Pf1N1B4_2969 0.66 -0.6
3,331,136 + Pf1N1B4_2969 0.66 -1.3
3,331,136 + Pf1N1B4_2969 0.66 -1.0
3,331,136 + Pf1N1B4_2969 0.66 +0.0
3,331,136 + -3.8
3,331,136 + Pf1N1B4_2969 0.66 -2.2
3,331,136 + Pf1N1B4_2969 0.66 -2.4
3,331,137 - Pf1N1B4_2969 0.66 -0.7
3,331,137 - Pf1N1B4_2969 0.66 -2.3
3,331,137 - Pf1N1B4_2969 0.66 +0.0
3,331,137 - Pf1N1B4_2969 0.66 -3.8
3,331,137 - Pf1N1B4_2969 0.66 -2.3
3,331,137 - Pf1N1B4_2969 0.66 +0.0
3,331,137 - Pf1N1B4_2969 0.66 +0.0
3,331,137 - Pf1N1B4_2969 0.66 -1.3
3,331,137 - Pf1N1B4_2969 0.66 +0.0
3,331,137 - Pf1N1B4_2969 0.66 -3.0
3,331,137 - Pf1N1B4_2969 0.66 -0.8
3,331,137 - Pf1N1B4_2969 0.66 -1.6
3,331,240 + Pf1N1B4_2969 0.76 +0.0
3,331,240 + Pf1N1B4_2969 0.76 +0.0
3,331,240 + +0.6
3,331,240 + Pf1N1B4_2969 0.76 -1.3
3,331,240 + Pf1N1B4_2969 0.76 -1.5
3,331,240 + Pf1N1B4_2969 0.76 -3.1
3,331,240 + Pf1N1B4_2969 0.76 +0.0
3,331,240 + Pf1N1B4_2969 0.76 +0.0
3,331,240 + Pf1N1B4_2969 0.76 -1.9
3,331,240 + Pf1N1B4_2969 0.76 -2.8
3,331,241 - Pf1N1B4_2969 0.76 +0.0
3,331,241 - Pf1N1B4_2969 0.76 +0.0
3,331,241 - Pf1N1B4_2969 0.76 +0.0
3,331,241 - Pf1N1B4_2969 0.76 -2.1
3,331,241 - Pf1N1B4_2969 0.76 -2.6
3,331,241 - Pf1N1B4_2969 0.76 -0.9
3,331,241 - Pf1N1B4_2969 0.76 +0.0

Or see this region's nucleotide sequence