Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2675

Experiment: Nitrate reduction, replicate B t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B t1
3,011,412	+		Pf1N1B4_2673	0.64	-3.5
3,011,514	-		Pf1N1B4_2673	0.71	-2.7
3,011,820	+				+0.0
3,011,820	+				-2.3
3,011,821	-				+0.0
3,011,821	-				+0.0
3,011,821	-				+0.0
3,011,821	-				-1.3
3,011,821	-				+0.0
3,011,821	-				+0.0
3,011,845	-				-2.3
3,011,845	-				+0.0
3,011,894	+				-1.5
3,011,894	+				+0.0
3,011,894	+				-1.0
3,011,894	+				-1.1
3,011,894	+				-1.3
3,011,894	+				+0.0
3,011,894	+				-2.1
3,011,894	+				-1.7
3,011,894	+				-1.5
3,011,894	+				+0.0
3,011,894	+				+0.0
3,011,895	-				+0.0
3,011,895	-				+0.0
3,011,895	-				+0.0
3,011,895	-				+0.0
3,011,895	-				-2.7
3,011,895	-				+0.0
3,011,895	-				-0.2
3,011,895	-				+0.0
3,011,899	-				-1.0
3,011,903	+				-2.9
3,011,903	+				+0.0
3,011,903	+				+0.0
3,011,903	+				+0.0
3,011,903	+				+0.0
3,011,903	+				-1.3
3,011,903	+				-1.9
3,011,904	-				+0.0
3,011,904	-				-1.9
3,011,904	-				+0.0
3,011,951	+				-0.5
3,011,986	+				+0.0
3,011,986	+				+0.0
3,011,986	+				-1.4
3,011,986	+				-2.1
3,011,986	+				+0.0
3,011,986	+				+0.0
3,011,986	+				+0.0
3,011,987	-				-1.2
3,011,987	-				+0.0
3,011,987	-				+0.0
3,011,987	-				+0.0
3,011,988	+				-1.9
3,011,988	+				-3.0
3,011,988	+				-1.0
3,011,988	+				+0.0
3,011,989	-				+0.0
3,012,016	+				-0.5
3,012,023	-				+0.0
3,012,058	+				+0.0
3,012,233	+		Pf1N1B4_2674	0.47	-3.5
3,012,234	-		Pf1N1B4_2674	0.47	-3.6
3,012,372	-		Pf1N1B4_2674	0.85	+0.0
3,012,401	+				+0.0
3,012,404	+				+0.0
3,012,404	+				+0.0
3,012,404	+				+0.0
3,012,405	-				+0.0
3,012,405	-				+0.0
3,012,405	-				-2.1
3,012,536	+				-3.3
3,012,537	-				-1.3
3,012,537	-				+0.0
3,012,537	-				+0.0
3,012,806	-		Pf1N1B4_2675	0.21	+0.0
3,012,883	+		Pf1N1B4_2675	0.25	+0.0
3,012,884	-		Pf1N1B4_2675	0.25	+0.0
3,013,040	+		Pf1N1B4_2675	0.33	+0.0
3,013,040	+		Pf1N1B4_2675	0.33	-1.8
3,013,040	+		Pf1N1B4_2675	0.33	-1.4
3,013,041	-		Pf1N1B4_2675	0.33	+0.0
3,013,041	-				-1.8
3,013,041	-		Pf1N1B4_2675	0.33	+0.0
3,013,052	+		Pf1N1B4_2675	0.34	+0.0
3,013,052	+		Pf1N1B4_2675	0.34	+0.0
3,013,053	-		Pf1N1B4_2675	0.34	-1.5
3,013,189	+		Pf1N1B4_2675	0.41	+0.0
3,013,348	+		Pf1N1B4_2675	0.49	-0.8
3,013,348	+		Pf1N1B4_2675	0.49	+0.0
3,013,348	+		Pf1N1B4_2675	0.49	+0.0
3,013,349	-		Pf1N1B4_2675	0.49	+0.0
3,013,458	+		Pf1N1B4_2675	0.55	-1.7
3,013,458	+		Pf1N1B4_2675	0.55	+0.0
3,013,458	+		Pf1N1B4_2675	0.55	+0.0
3,013,458	+		Pf1N1B4_2675	0.55	-1.2
3,013,698	+		Pf1N1B4_2675	0.67	+0.0
3,013,699	-		Pf1N1B4_2675	0.67	+0.0
3,013,699	-		Pf1N1B4_2675	0.67	+0.0
3,013,699	-		Pf1N1B4_2675	0.67	+0.0
3,013,699	-		Pf1N1B4_2675	0.67	+0.0
3,013,746	+		Pf1N1B4_2675	0.70	+0.0
3,013,749	+		Pf1N1B4_2675	0.70	+0.0
3,013,749	+		Pf1N1B4_2675	0.70	+0.0
3,013,749	+		Pf1N1B4_2675	0.70	-1.7
3,013,750	-		Pf1N1B4_2675	0.70	+0.0
3,013,750	-		Pf1N1B4_2675	0.70	+0.0
3,013,750	-		Pf1N1B4_2675	0.70	+0.0
3,013,750	-		Pf1N1B4_2675	0.70	-1.9
3,013,880	+		Pf1N1B4_2675	0.77	+0.0
3,013,880	+		Pf1N1B4_2675	0.77	+0.0
3,013,880	+		Pf1N1B4_2675	0.77	+0.0
3,013,880	+		Pf1N1B4_2675	0.77	+0.0
3,013,880	+		Pf1N1B4_2675	0.77	+0.0
3,013,881	-		Pf1N1B4_2675	0.77	+0.0
3,013,881	-		Pf1N1B4_2675	0.77	+0.0
3,013,881	-		Pf1N1B4_2675	0.77	+0.0
3,013,881	-		Pf1N1B4_2675	0.77	+0.0
3,013,881	-		Pf1N1B4_2675	0.77	+0.0
3,013,881	-				-2.0
3,013,881	-		Pf1N1B4_2675	0.77	+0.0
3,014,055	+		Pf1N1B4_2675	0.86	-1.0
3,014,055	+		Pf1N1B4_2675	0.86	-1.1
3,014,281	+				-1.8
3,014,282	-				-2.4
3,014,288	+				+0.0
3,014,312	-				-1.8
3,014,321	+				+0.0
3,014,498	+				-1.1
3,014,499	-				+0.0
3,014,510	+				+0.0
3,014,510	+				-1.2
3,014,522	+				+0.0
3,014,522	+				+0.0
3,014,522	+				-4.9
3,014,748	+		Pf1N1B4_2676	0.18	+0.0
3,014,748	+		Pf1N1B4_2676	0.18	+0.0
3,014,748	+		Pf1N1B4_2676	0.18	+0.0
3,014,772	+		Pf1N1B4_2676	0.19	+0.0