Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00110

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_65p00100 and PGA1_65p00110 are separated by 269 nucleotidesPGA1_65p00110 and PGA1_65p00120 are separated by 8 nucleotidesPGA1_65p00120 and PGA1_65p00130 are separated by 8 nucleotides PGA1_65p00100: PGA1_65p00100 - Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases, at 15,434 to 15,985 _65p00100 PGA1_65p00110: PGA1_65p00110 - putative amino-acid ABC transporter, periplasmic solute-binding protein, at 16,255 to 17,031 _65p00110 PGA1_65p00120: PGA1_65p00120 - putative amino-acid ABC transporter, permease protein, at 17,040 to 17,714 _65p00120 PGA1_65p00130: PGA1_65p00130 - putative amino-acid ABC transporter, ATP-binding protein, at 17,723 to 18,478 _65p00130 Position (kb) 16 17 18Strain fitness (log2 ratio) -1 0 1 2at 15.646 kb on + strand, within PGA1_65p00100at 16.186 kb on - strandat 16.197 kb on - strandat 16.230 kb on - strandat 16.511 kb on - strand, within PGA1_65p00110at 16.740 kb on + strand, within PGA1_65p00110at 16.770 kb on - strand, within PGA1_65p00110at 16.775 kb on - strand, within PGA1_65p00110at 16.881 kb on + strand, within PGA1_65p00110at 16.912 kb on - strand, within PGA1_65p00110at 16.931 kb on - strand, within PGA1_65p00110at 17.274 kb on - strand, within PGA1_65p00120at 17.436 kb on - strand, within PGA1_65p00120at 17.519 kb on + strand, within PGA1_65p00120at 17.657 kb on + strandat 17.713 kb on - strandat 17.738 kb on - strandat 17.851 kb on + strand, within PGA1_65p00130at 17.978 kb on - strand, within PGA1_65p00130

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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15,646 + PGA1_65p00100 0.38 +1.0
16,186 - +0.9
16,197 - +1.0
16,230 - -0.3
16,511 - PGA1_65p00110 0.33 +0.4
16,740 + PGA1_65p00110 0.62 +1.0
16,770 - PGA1_65p00110 0.66 +0.7
16,775 - PGA1_65p00110 0.67 +0.7
16,881 + PGA1_65p00110 0.81 +0.6
16,912 - PGA1_65p00110 0.85 +0.1
16,931 - PGA1_65p00110 0.87 -0.8
17,274 - PGA1_65p00120 0.35 -0.7
17,436 - PGA1_65p00120 0.59 +0.7
17,519 + PGA1_65p00120 0.71 -0.0
17,657 + +2.3
17,713 - +0.7
17,738 - -0.8
17,851 + PGA1_65p00130 0.17 +1.4
17,978 - PGA1_65p00130 0.34 -0.4

Or see this region's nucleotide sequence