Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00340

Experiment: L-Histidine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_78p00320 and PGA1_78p00330 are separated by 37 nucleotidesPGA1_78p00330 and PGA1_78p00340 are separated by 81 nucleotidesPGA1_78p00340 and PGA1_78p00350 are separated by 56 nucleotides PGA1_78p00320: PGA1_78p00320 - putative HTH-type transcriptional regulator, at 39,674 to 40,717 _78p00320 PGA1_78p00330: PGA1_78p00330 - putative transcriptional regulator, at 40,755 to 41,387 _78p00330 PGA1_78p00340: PGA1_78p00340 - Uncharacterized protein, possibly involved in utilization of glycolate and propanediol, at 41,469 to 41,960 _78p00340 PGA1_78p00350: PGA1_78p00350 - FAD dependent oxidoreductase, at 42,017 to 43,354 _78p00350 Position (kb) 41 42Strain fitness (log2 ratio) -2 -1 0 1at 41.050 kb on - strand, within PGA1_78p00330at 41.457 kb on + strandat 41.457 kb on + strandat 41.465 kb on - strandat 41.538 kb on - strand, within PGA1_78p00340at 41.556 kb on - strand, within PGA1_78p00340at 41.729 kb on - strand, within PGA1_78p00340at 41.729 kb on - strand, within PGA1_78p00340at 41.729 kb on - strand, within PGA1_78p00340at 41.765 kb on - strand, within PGA1_78p00340at 42.020 kb on + strandat 42.539 kb on - strand, within PGA1_78p00350at 42.737 kb on + strand, within PGA1_78p00350

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
remove
41,050 - PGA1_78p00330 0.47 -0.1
41,457 + -2.0
41,457 + -0.7
41,465 - +0.1
41,538 - PGA1_78p00340 0.14 -0.2
41,556 - PGA1_78p00340 0.18 -0.1
41,729 - PGA1_78p00340 0.53 +0.4
41,729 - PGA1_78p00340 0.53 +0.9
41,729 - PGA1_78p00340 0.53 +0.9
41,765 - PGA1_78p00340 0.60 +0.8
42,020 + +1.7
42,539 - PGA1_78p00350 0.39 +0.0
42,737 + PGA1_78p00350 0.54 +0.6

Or see this region's nucleotide sequence