Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00460 and PGA1_262p00470 are separated by 0 nucleotides PGA1_262p00470 and PGA1_262p00480 overlap by 17 nucleotides PGA1_262p00480 and PGA1_262p00490 are separated by 38 nucleotides PGA1_262p00490 and PGA1_262p00500 are separated by 77 nucleotides
PGA1_262p00460: PGA1_262p00460 - transcriptional regulator, MerR family, at 55,174 to 55,602
_262p00460
PGA1_262p00470: PGA1_262p00470 - Plasmid stabilization system protein, at 55,603 to 55,971
_262p00470
PGA1_262p00480: PGA1_262p00480 - putative addiction module antidote protein, CC2985 family, at 55,955 to 56,230
_262p00480
PGA1_262p00490: PGA1_262p00490 - hypothetical protein, at 56,269 to 56,991
_262p00490
PGA1_262p00500: PGA1_262p00500 - putative ATP dependent DNA ligase, at 57,069 to 58,625
_262p00500
Position (kb) 56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 55.303 kb on + strand, within PGA1_262p00460 at 55.308 kb on + strand, within PGA1_262p00460 at 55.475 kb on - strand, within PGA1_262p00460 at 55.482 kb on - strand, within PGA1_262p00460 at 55.657 kb on - strand, within PGA1_262p00470 at 55.699 kb on + strand, within PGA1_262p00470 at 55.709 kb on + strand, within PGA1_262p00470 at 55.802 kb on - strand, within PGA1_262p00470 at 55.851 kb on - strand, within PGA1_262p00470 at 56.321 kb on - strand at 56.321 kb on - strand at 56.662 kb on + strand, within PGA1_262p00490 at 56.760 kb on + strand, within PGA1_262p00490 at 56.863 kb on + strand, within PGA1_262p00490 at 56.884 kb on + strand, within PGA1_262p00490 at 56.955 kb on + strand at 56.961 kb on + strand at 56.961 kb on + strand at 56.963 kb on - strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.969 kb on - strand at 56.969 kb on - strand at 56.974 kb on - strand at 57.024 kb on + strand at 57.057 kb on + strand at 57.065 kb on - strand at 57.065 kb on - strand at 57.095 kb on + strand at 57.245 kb on - strand, within PGA1_262p00500 at 57.296 kb on - strand, within PGA1_262p00500 at 57.296 kb on - strand, within PGA1_262p00500 at 57.331 kb on + strand, within PGA1_262p00500 at 57.331 kb on + strand, within PGA1_262p00500 at 57.339 kb on - strand, within PGA1_262p00500 at 57.376 kb on - strand, within PGA1_262p00500 at 57.390 kb on - strand, within PGA1_262p00500 at 57.531 kb on + strand, within PGA1_262p00500 at 57.560 kb on + strand, within PGA1_262p00500 at 57.571 kb on + strand, within PGA1_262p00500 at 57.579 kb on - strand, within PGA1_262p00500 at 57.693 kb on - strand, within PGA1_262p00500 at 57.871 kb on + strand, within PGA1_262p00500 at 57.879 kb on - strand, within PGA1_262p00500
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 55,303 + PGA1_262p00460 0.30 +0.2 55,308 + PGA1_262p00460 0.31 +0.1 55,475 - PGA1_262p00460 0.70 -0.9 55,482 - PGA1_262p00460 0.72 +0.3 55,657 - PGA1_262p00470 0.15 -2.9 55,699 + PGA1_262p00470 0.26 +0.8 55,709 + PGA1_262p00470 0.29 +0.1 55,802 - PGA1_262p00470 0.54 -0.7 55,851 - PGA1_262p00470 0.67 +0.0 56,321 - +0.3 56,321 - +0.5 56,662 + PGA1_262p00490 0.54 +1.4 56,760 + PGA1_262p00490 0.68 +0.5 56,863 + PGA1_262p00490 0.82 +0.0 56,884 + PGA1_262p00490 0.85 +0.9 56,955 + +0.3 56,961 + -0.6 56,961 + -0.7 56,963 - +0.6 56,966 + -0.9 56,966 + -0.5 56,966 + +0.8 56,966 + +0.7 56,969 - +0.3 56,969 - -1.4 56,974 - -0.1 57,024 + -0.4 57,057 + -0.0 57,065 - -0.7 57,065 - -2.3 57,095 + +0.4 57,245 - PGA1_262p00500 0.11 -0.1 57,296 - PGA1_262p00500 0.15 -0.1 57,296 - PGA1_262p00500 0.15 -0.0 57,331 + PGA1_262p00500 0.17 -0.2 57,331 + PGA1_262p00500 0.17 +0.2 57,339 - PGA1_262p00500 0.17 -0.5 57,376 - PGA1_262p00500 0.20 -0.1 57,390 - PGA1_262p00500 0.21 -1.0 57,531 + PGA1_262p00500 0.30 -0.9 57,560 + PGA1_262p00500 0.32 -0.7 57,571 + PGA1_262p00500 0.32 +0.2 57,579 - PGA1_262p00500 0.33 +1.3 57,693 - PGA1_262p00500 0.40 +0.5 57,871 + PGA1_262p00500 0.52 +0.4 57,879 - PGA1_262p00500 0.52 -0.1
Or see this region's nucleotide sequence