Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c32820 and PGA1_c32830 are separated by 64 nucleotides PGA1_c32830 and PGA1_c32840 are separated by 33 nucleotides PGA1_c32840 and PGA1_c32850 are separated by 53 nucleotides PGA1_c32850 and PGA1_c32860 are separated by 71 nucleotides
PGA1_c32820: PGA1_c32820 - peptidase, M16 family, at 3,442,914 to 3,444,338
_c32820
PGA1_c32830: PGA1_c32830 - hypothetical protein, at 3,444,403 to 3,444,600
_c32830
PGA1_c32840: PGA1_c32840 - Protein of unknown function (DUF3035)., at 3,444,634 to 3,445,149
_c32840
PGA1_c32850: PGA1_c32850 - putative lipoprotein signal peptidase, at 3,445,203 to 3,445,685
_c32850
PGA1_c32860: PGA1_c32860 - bifunctional purine biosynthesis protein PurH, at 3,445,757 to 3,447,346
_c32860
Position (kb)
3445
3446 Strain fitness (log2 ratio)
-2
-1
0
1 at 3444.208 kb on - strand at 3444.219 kb on - strand at 3444.261 kb on + strand at 3444.320 kb on + strand at 3444.388 kb on + strand at 3444.451 kb on - strand, within PGA1_c32830 at 3444.458 kb on - strand, within PGA1_c32830 at 3444.458 kb on - strand, within PGA1_c32830 at 3444.462 kb on - strand, within PGA1_c32830 at 3444.557 kb on - strand, within PGA1_c32830 at 3444.569 kb on - strand, within PGA1_c32830 at 3444.616 kb on + strand at 3444.616 kb on + strand at 3444.657 kb on - strand at 3444.657 kb on - strand at 3444.751 kb on - strand, within PGA1_c32840 at 3444.752 kb on + strand, within PGA1_c32840 at 3444.760 kb on - strand, within PGA1_c32840 at 3444.772 kb on + strand, within PGA1_c32840 at 3444.858 kb on + strand, within PGA1_c32840 at 3444.859 kb on - strand, within PGA1_c32840 at 3444.898 kb on - strand, within PGA1_c32840 at 3444.940 kb on - strand, within PGA1_c32840 at 3444.952 kb on - strand, within PGA1_c32840 at 3444.974 kb on + strand, within PGA1_c32840 at 3444.974 kb on + strand, within PGA1_c32840 at 3444.982 kb on - strand, within PGA1_c32840 at 3445.001 kb on - strand, within PGA1_c32840 at 3445.021 kb on - strand, within PGA1_c32840 at 3445.062 kb on - strand, within PGA1_c32840 at 3445.125 kb on - strand at 3445.153 kb on + strand at 3445.187 kb on + strand at 3445.195 kb on - strand at 3445.195 kb on - strand at 3445.195 kb on - strand at 3445.195 kb on - strand at 3445.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 3,444,208 - -0.0 3,444,219 - -2.2 3,444,261 + +0.3 3,444,320 + +0.2 3,444,388 + +0.6 3,444,451 - PGA1_c32830 0.24 -0.1 3,444,458 - PGA1_c32830 0.28 -0.9 3,444,458 - PGA1_c32830 0.28 -0.1 3,444,462 - PGA1_c32830 0.30 +1.5 3,444,557 - PGA1_c32830 0.78 -0.5 3,444,569 - PGA1_c32830 0.84 +0.9 3,444,616 + +1.2 3,444,616 + -0.3 3,444,657 - +0.1 3,444,657 - -0.5 3,444,751 - PGA1_c32840 0.23 +0.3 3,444,752 + PGA1_c32840 0.23 +0.5 3,444,760 - PGA1_c32840 0.24 -0.2 3,444,772 + PGA1_c32840 0.27 +0.8 3,444,858 + PGA1_c32840 0.43 -0.5 3,444,859 - PGA1_c32840 0.44 -0.7 3,444,898 - PGA1_c32840 0.51 -0.4 3,444,940 - PGA1_c32840 0.59 -0.3 3,444,952 - PGA1_c32840 0.62 -0.3 3,444,974 + PGA1_c32840 0.66 -0.5 3,444,974 + PGA1_c32840 0.66 -0.7 3,444,982 - PGA1_c32840 0.67 -2.0 3,445,001 - PGA1_c32840 0.71 -1.1 3,445,021 - PGA1_c32840 0.75 -0.1 3,445,062 - PGA1_c32840 0.83 +0.6 3,445,125 - +0.9 3,445,153 + -0.6 3,445,187 + -1.7 3,445,195 - -1.1 3,445,195 - -0.7 3,445,195 - +0.6 3,445,195 - -0.4 3,445,208 - -0.1
Or see this region's nucleotide sequence