Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23710

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c23700 and PGA1_c23710 overlap by 1 nucleotidesPGA1_c23710 and PGA1_c23720 are separated by 69 nucleotides PGA1_c23700: PGA1_c23700 - protein HflC, at 2,473,362 to 2,474,252 _c23700 PGA1_c23710: PGA1_c23710 - putative protein HflK, at 2,474,252 to 2,475,406 _c23710 PGA1_c23720: PGA1_c23720 - glutathione reductase Gor, at 2,475,476 to 2,476,831 _c23720 Position (kb) 2474 2475 2476Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2473.265 kb on + strandat 2473.280 kb on - strandat 2473.304 kb on - strandat 2473.304 kb on - strandat 2473.310 kb on - strandat 2473.317 kb on - strandat 2473.368 kb on - strandat 2473.439 kb on + strandat 2473.449 kb on + strandat 2473.575 kb on - strand, within PGA1_c23700at 2473.690 kb on + strand, within PGA1_c23700at 2473.922 kb on - strand, within PGA1_c23700at 2474.091 kb on - strand, within PGA1_c23700at 2474.208 kb on - strandat 2474.212 kb on + strandat 2474.232 kb on + strandat 2474.271 kb on - strandat 2474.311 kb on - strandat 2474.351 kb on + strandat 2474.473 kb on - strand, within PGA1_c23710at 2474.484 kb on - strand, within PGA1_c23710at 2474.912 kb on - strand, within PGA1_c23710at 2474.917 kb on + strand, within PGA1_c23710at 2474.965 kb on + strand, within PGA1_c23710at 2474.973 kb on - strand, within PGA1_c23710at 2474.973 kb on - strand, within PGA1_c23710at 2474.973 kb on - strand, within PGA1_c23710at 2475.263 kb on - strand, within PGA1_c23710at 2475.343 kb on - strandat 2475.447 kb on + strandat 2475.455 kb on - strandat 2475.495 kb on - strandat 2475.498 kb on - strandat 2475.512 kb on - strandat 2475.514 kb on + strandat 2475.726 kb on - strand, within PGA1_c23720at 2475.949 kb on - strand, within PGA1_c23720at 2476.015 kb on + strand, within PGA1_c23720at 2476.261 kb on + strand, within PGA1_c23720

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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2,473,265 + -0.4
2,473,280 - -0.6
2,473,304 - +0.1
2,473,304 - -0.6
2,473,310 - +0.9
2,473,317 - -0.0
2,473,368 - +1.3
2,473,439 + +0.4
2,473,449 + +0.9
2,473,575 - PGA1_c23700 0.24 +1.2
2,473,690 + PGA1_c23700 0.37 +0.9
2,473,922 - PGA1_c23700 0.63 +1.0
2,474,091 - PGA1_c23700 0.82 +0.8
2,474,208 - -3.0
2,474,212 + +1.2
2,474,232 + +2.2
2,474,271 - +0.5
2,474,311 - +1.5
2,474,351 + -0.1
2,474,473 - PGA1_c23710 0.19 +0.5
2,474,484 - PGA1_c23710 0.20 -0.4
2,474,912 - PGA1_c23710 0.57 +0.2
2,474,917 + PGA1_c23710 0.58 +0.6
2,474,965 + PGA1_c23710 0.62 +1.3
2,474,973 - PGA1_c23710 0.62 +1.0
2,474,973 - PGA1_c23710 0.62 +1.8
2,474,973 - PGA1_c23710 0.62 +0.2
2,475,263 - PGA1_c23710 0.88 +0.7
2,475,343 - +1.0
2,475,447 + +0.0
2,475,455 - +0.6
2,475,495 - +0.4
2,475,498 - +0.0
2,475,512 - -0.1
2,475,514 + -2.1
2,475,726 - PGA1_c23720 0.18 -2.0
2,475,949 - PGA1_c23720 0.35 -1.4
2,476,015 + PGA1_c23720 0.40 -1.0
2,476,261 + PGA1_c23720 0.58 -0.7

Or see this region's nucleotide sequence