Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18160

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c18150 and PGA1_c18160 are separated by 212 nucleotidesPGA1_c18160 and PGA1_c18170 are separated by 271 nucleotides PGA1_c18150: PGA1_c18150 - Hemolysin-type calcium-binding repeat (2 copies)., at 1,893,496 to 1,894,764 _c18150 PGA1_c18160: PGA1_c18160 - trigger factor Tig, at 1,894,977 to 1,896,308 _c18160 PGA1_c18170: PGA1_c18170 - hypothetical protein, at 1,896,580 to 1,897,710 _c18170 Position (kb) 1894 1895 1896 1897Strain fitness (log2 ratio) -1 0 1 2at 1894.010 kb on + strand, within PGA1_c18150at 1894.018 kb on - strand, within PGA1_c18150at 1894.024 kb on - strand, within PGA1_c18150at 1894.028 kb on - strand, within PGA1_c18150at 1894.028 kb on - strand, within PGA1_c18150at 1894.028 kb on - strand, within PGA1_c18150at 1894.061 kb on + strand, within PGA1_c18150at 1894.150 kb on + strand, within PGA1_c18150at 1894.436 kb on - strand, within PGA1_c18150at 1894.459 kb on + strand, within PGA1_c18150at 1894.575 kb on - strand, within PGA1_c18150at 1894.933 kb on - strandat 1894.940 kb on + strandat 1895.025 kb on - strandat 1895.385 kb on - strand, within PGA1_c18160at 1895.563 kb on + strand, within PGA1_c18160at 1895.872 kb on + strand, within PGA1_c18160at 1895.880 kb on - strand, within PGA1_c18160at 1896.128 kb on - strand, within PGA1_c18160at 1896.163 kb on + strand, within PGA1_c18160at 1896.417 kb on + strandat 1896.425 kb on - strandat 1896.425 kb on - strandat 1896.425 kb on - strandat 1896.425 kb on - strandat 1896.484 kb on + strandat 1896.564 kb on + strandat 1896.856 kb on - strand, within PGA1_c18170at 1896.977 kb on + strand, within PGA1_c18170at 1897.007 kb on - strand, within PGA1_c18170at 1897.010 kb on + strand, within PGA1_c18170at 1897.018 kb on - strand, within PGA1_c18170at 1897.018 kb on - strand, within PGA1_c18170at 1897.027 kb on + strand, within PGA1_c18170at 1897.140 kb on + strand, within PGA1_c18170at 1897.148 kb on - strand, within PGA1_c18170at 1897.188 kb on + strand, within PGA1_c18170at 1897.188 kb on + strand, within PGA1_c18170at 1897.188 kb on + strand, within PGA1_c18170at 1897.194 kb on - strand, within PGA1_c18170at 1897.196 kb on - strand, within PGA1_c18170at 1897.297 kb on + strand, within PGA1_c18170at 1897.305 kb on - strand, within PGA1_c18170

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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1,894,010 + PGA1_c18150 0.41 -0.0
1,894,018 - PGA1_c18150 0.41 +1.2
1,894,024 - PGA1_c18150 0.42 -0.9
1,894,028 - PGA1_c18150 0.42 -1.2
1,894,028 - PGA1_c18150 0.42 +0.1
1,894,028 - PGA1_c18150 0.42 +0.3
1,894,061 + PGA1_c18150 0.45 -0.2
1,894,150 + PGA1_c18150 0.52 +0.2
1,894,436 - PGA1_c18150 0.74 -1.6
1,894,459 + PGA1_c18150 0.76 -1.6
1,894,575 - PGA1_c18150 0.85 -1.0
1,894,933 - +0.6
1,894,940 + -0.6
1,895,025 - +1.0
1,895,385 - PGA1_c18160 0.31 +2.3
1,895,563 + PGA1_c18160 0.44 +0.4
1,895,872 + PGA1_c18160 0.67 +1.4
1,895,880 - PGA1_c18160 0.68 +0.8
1,896,128 - PGA1_c18160 0.86 +0.4
1,896,163 + PGA1_c18160 0.89 +0.8
1,896,417 + +0.0
1,896,425 - +0.1
1,896,425 - -0.9
1,896,425 - +0.1
1,896,425 - +0.8
1,896,484 + +0.0
1,896,564 + -0.1
1,896,856 - PGA1_c18170 0.24 -0.5
1,896,977 + PGA1_c18170 0.35 +0.1
1,897,007 - PGA1_c18170 0.38 -0.6
1,897,010 + PGA1_c18170 0.38 -1.4
1,897,018 - PGA1_c18170 0.39 +0.4
1,897,018 - PGA1_c18170 0.39 +0.3
1,897,027 + PGA1_c18170 0.40 +0.2
1,897,140 + PGA1_c18170 0.50 +0.6
1,897,148 - PGA1_c18170 0.50 +0.0
1,897,188 + PGA1_c18170 0.54 +0.8
1,897,188 + PGA1_c18170 0.54 -1.2
1,897,188 + PGA1_c18170 0.54 +0.3
1,897,194 - PGA1_c18170 0.54 +0.7
1,897,196 - PGA1_c18170 0.54 -0.5
1,897,297 + PGA1_c18170 0.63 +0.4
1,897,305 - PGA1_c18170 0.64 +0.8

Or see this region's nucleotide sequence