Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17660 and PGA1_c17670 are separated by 57 nucleotides PGA1_c17670 and PGA1_c17680 are separated by 126 nucleotides PGA1_c17680 and PGA1_c17690 are separated by 450 nucleotides
PGA1_c17660: PGA1_c17660 - hypothetical protein, at 1,850,229 to 1,850,417
_c17660
PGA1_c17670: PGA1_c17670 - transcriptional regulator, crp family, at 1,850,475 to 1,851,233
_c17670
PGA1_c17680: PGA1_c17680 - hypothetical protein, at 1,851,360 to 1,851,596
_c17680
PGA1_c17690: PGA1_c17690 - serine acetyltransferase CysE, at 1,852,047 to 1,852,862
_c17690
Position (kb)
1851
1852 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1850.406 kb on + strand at 1850.414 kb on - strand at 1850.460 kb on - strand at 1850.460 kb on - strand at 1850.460 kb on - strand at 1850.496 kb on - strand at 1850.609 kb on + strand, within PGA1_c17670 at 1850.609 kb on + strand, within PGA1_c17670 at 1850.627 kb on - strand, within PGA1_c17670 at 1850.676 kb on + strand, within PGA1_c17670 at 1850.676 kb on + strand, within PGA1_c17670 at 1850.676 kb on + strand, within PGA1_c17670 at 1850.697 kb on - strand, within PGA1_c17670 at 1850.831 kb on - strand, within PGA1_c17670 at 1850.831 kb on - strand, within PGA1_c17670 at 1850.831 kb on - strand, within PGA1_c17670 at 1850.840 kb on + strand, within PGA1_c17670 at 1850.845 kb on + strand, within PGA1_c17670 at 1850.848 kb on - strand, within PGA1_c17670 at 1850.912 kb on + strand, within PGA1_c17670 at 1850.924 kb on + strand, within PGA1_c17670 at 1850.924 kb on + strand, within PGA1_c17670 at 1850.924 kb on + strand, within PGA1_c17670 at 1850.924 kb on + strand, within PGA1_c17670 at 1850.924 kb on + strand, within PGA1_c17670 at 1850.924 kb on + strand, within PGA1_c17670 at 1850.924 kb on + strand, within PGA1_c17670 at 1850.924 kb on + strand, within PGA1_c17670 at 1850.924 kb on + strand, within PGA1_c17670 at 1850.924 kb on + strand, within PGA1_c17670 at 1850.924 kb on + strand, within PGA1_c17670 at 1850.932 kb on - strand, within PGA1_c17670 at 1850.932 kb on - strand, within PGA1_c17670 at 1850.932 kb on - strand, within PGA1_c17670 at 1850.932 kb on - strand, within PGA1_c17670 at 1850.932 kb on - strand, within PGA1_c17670 at 1850.932 kb on - strand, within PGA1_c17670 at 1850.932 kb on - strand, within PGA1_c17670 at 1850.932 kb on - strand, within PGA1_c17670 at 1850.932 kb on - strand, within PGA1_c17670 at 1850.932 kb on - strand, within PGA1_c17670 at 1850.932 kb on - strand, within PGA1_c17670 at 1850.932 kb on - strand, within PGA1_c17670 at 1850.932 kb on - strand, within PGA1_c17670 at 1850.934 kb on + strand, within PGA1_c17670 at 1850.939 kb on + strand, within PGA1_c17670 at 1850.939 kb on + strand, within PGA1_c17670 at 1850.939 kb on + strand, within PGA1_c17670 at 1850.939 kb on + strand, within PGA1_c17670 at 1850.939 kb on + strand, within PGA1_c17670 at 1850.949 kb on + strand, within PGA1_c17670 at 1850.957 kb on - strand, within PGA1_c17670 at 1851.053 kb on - strand, within PGA1_c17670 at 1851.134 kb on + strand, within PGA1_c17670 at 1851.134 kb on - strand, within PGA1_c17670 at 1851.134 kb on - strand, within PGA1_c17670 at 1851.222 kb on - strand at 1851.222 kb on - strand at 1851.223 kb on - strand at 1851.249 kb on + strand at 1851.249 kb on + strand at 1851.249 kb on + strand at 1851.249 kb on + strand at 1851.249 kb on + strand at 1851.249 kb on + strand at 1851.249 kb on + strand at 1851.249 kb on + strand at 1851.252 kb on - strand at 1851.252 kb on - strand at 1851.254 kb on + strand at 1851.257 kb on - strand at 1851.257 kb on - strand at 1851.257 kb on - strand at 1851.257 kb on - strand at 1851.257 kb on - strand at 1851.259 kb on + strand at 1851.270 kb on + strand at 1851.270 kb on + strand at 1851.270 kb on + strand at 1851.270 kb on + strand at 1851.278 kb on - strand at 1851.311 kb on - strand at 1851.388 kb on - strand, within PGA1_c17680 at 1851.560 kb on + strand, within PGA1_c17680 at 1851.676 kb on + strand at 1851.681 kb on + strand at 1851.682 kb on - strand at 1851.836 kb on + strand at 1851.859 kb on - strand at 1851.911 kb on + strand at 1851.954 kb on + strand at 1852.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 1,850,406 + +1.2 1,850,414 - -0.5 1,850,460 - -0.1 1,850,460 - -0.2 1,850,460 - -0.8 1,850,496 - +0.0 1,850,609 + PGA1_c17670 0.18 -0.8 1,850,609 + PGA1_c17670 0.18 -0.1 1,850,627 - PGA1_c17670 0.20 +0.8 1,850,676 + PGA1_c17670 0.26 +0.3 1,850,676 + PGA1_c17670 0.26 -0.2 1,850,676 + PGA1_c17670 0.26 +0.6 1,850,697 - PGA1_c17670 0.29 +0.7 1,850,831 - PGA1_c17670 0.47 +0.9 1,850,831 - PGA1_c17670 0.47 -0.2 1,850,831 - PGA1_c17670 0.47 +0.2 1,850,840 + PGA1_c17670 0.48 -0.5 1,850,845 + PGA1_c17670 0.49 -0.7 1,850,848 - PGA1_c17670 0.49 +0.9 1,850,912 + PGA1_c17670 0.58 -0.1 1,850,924 + PGA1_c17670 0.59 +0.9 1,850,924 + PGA1_c17670 0.59 +0.0 1,850,924 + PGA1_c17670 0.59 +0.1 1,850,924 + PGA1_c17670 0.59 +1.3 1,850,924 + PGA1_c17670 0.59 +0.2 1,850,924 + PGA1_c17670 0.59 -0.2 1,850,924 + PGA1_c17670 0.59 +0.3 1,850,924 + PGA1_c17670 0.59 -1.1 1,850,924 + PGA1_c17670 0.59 -0.2 1,850,924 + PGA1_c17670 0.59 +0.2 1,850,924 + PGA1_c17670 0.59 +0.4 1,850,932 - PGA1_c17670 0.60 -0.1 1,850,932 - PGA1_c17670 0.60 +0.8 1,850,932 - PGA1_c17670 0.60 +0.2 1,850,932 - PGA1_c17670 0.60 +0.5 1,850,932 - PGA1_c17670 0.60 -0.5 1,850,932 - PGA1_c17670 0.60 -0.1 1,850,932 - PGA1_c17670 0.60 +0.1 1,850,932 - PGA1_c17670 0.60 -2.2 1,850,932 - PGA1_c17670 0.60 +0.3 1,850,932 - PGA1_c17670 0.60 -1.1 1,850,932 - PGA1_c17670 0.60 +1.1 1,850,932 - PGA1_c17670 0.60 +0.6 1,850,932 - PGA1_c17670 0.60 -1.4 1,850,934 + PGA1_c17670 0.60 +0.3 1,850,939 + PGA1_c17670 0.61 -0.1 1,850,939 + PGA1_c17670 0.61 +0.4 1,850,939 + PGA1_c17670 0.61 -0.4 1,850,939 + PGA1_c17670 0.61 -0.1 1,850,939 + PGA1_c17670 0.61 +0.3 1,850,949 + PGA1_c17670 0.62 -2.4 1,850,957 - PGA1_c17670 0.64 +0.7 1,851,053 - PGA1_c17670 0.76 -0.0 1,851,134 + PGA1_c17670 0.87 -0.3 1,851,134 - PGA1_c17670 0.87 -0.2 1,851,134 - PGA1_c17670 0.87 -0.0 1,851,222 - -0.6 1,851,222 - +2.0 1,851,223 - -1.3 1,851,249 + +0.6 1,851,249 + -0.8 1,851,249 + -1.4 1,851,249 + -1.3 1,851,249 + +0.2 1,851,249 + +0.4 1,851,249 + -0.2 1,851,249 + -0.5 1,851,252 - -0.4 1,851,252 - -0.4 1,851,254 + -2.2 1,851,257 - -0.6 1,851,257 - -0.5 1,851,257 - +0.6 1,851,257 - +0.9 1,851,257 - +0.4 1,851,259 + +0.5 1,851,270 + +0.3 1,851,270 + +0.1 1,851,270 + -0.2 1,851,270 + +0.9 1,851,278 - -0.6 1,851,311 - -0.2 1,851,388 - PGA1_c17680 0.12 +1.3 1,851,560 + PGA1_c17680 0.84 -1.3 1,851,676 + -0.7 1,851,681 + +0.8 1,851,682 - +0.7 1,851,836 + -1.1 1,851,859 - +0.3 1,851,911 + +0.7 1,851,954 + -0.6 1,852,020 - -0.2
Or see this region's nucleotide sequence