Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16820

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16810 and PGA1_c16820 are separated by 98 nucleotidesPGA1_c16820 and PGA1_c16830 are separated by 50 nucleotidesPGA1_c16830 and PGA1_c16840 are separated by 205 nucleotides PGA1_c16810: PGA1_c16810 - enoyl-[acyl-carrier-protein] reductase FabI, at 1,754,040 to 1,754,858 _c16810 PGA1_c16820: PGA1_c16820 - putative threonine efflux protein, at 1,754,957 to 1,755,571 _c16820 PGA1_c16830: PGA1_c16830 - xanthine phosphoribosyltransferase Gpt, at 1,755,622 to 1,756,125 _c16830 PGA1_c16840: PGA1_c16840 - putative aspartate aminotransferase, at 1,756,331 to 1,757,521 _c16840 Position (kb) 1754 1755 1756Strain fitness (log2 ratio) -1 0 1 2at 1753.973 kb on + strandat 1754.884 kb on + strandat 1754.884 kb on + strandat 1754.884 kb on + strandat 1754.905 kb on - strandat 1755.002 kb on - strandat 1755.026 kb on - strand, within PGA1_c16820at 1755.072 kb on + strand, within PGA1_c16820at 1755.215 kb on + strand, within PGA1_c16820at 1755.233 kb on - strand, within PGA1_c16820at 1755.322 kb on + strand, within PGA1_c16820at 1755.335 kb on - strand, within PGA1_c16820at 1755.336 kb on - strand, within PGA1_c16820at 1755.374 kb on + strand, within PGA1_c16820at 1755.380 kb on + strand, within PGA1_c16820at 1755.392 kb on - strand, within PGA1_c16820at 1755.397 kb on - strand, within PGA1_c16820at 1755.447 kb on + strand, within PGA1_c16820at 1755.449 kb on + strand, within PGA1_c16820at 1755.593 kb on + strandat 1755.601 kb on - strandat 1755.751 kb on + strand, within PGA1_c16830at 1755.767 kb on + strand, within PGA1_c16830at 1755.850 kb on + strand, within PGA1_c16830at 1755.851 kb on + strand, within PGA1_c16830at 1755.878 kb on - strand, within PGA1_c16830at 1755.950 kb on + strand, within PGA1_c16830at 1755.950 kb on + strand, within PGA1_c16830at 1755.958 kb on - strand, within PGA1_c16830at 1755.996 kb on + strand, within PGA1_c16830at 1756.004 kb on - strand, within PGA1_c16830at 1756.142 kb on - strandat 1756.226 kb on - strandat 1756.234 kb on + strandat 1756.234 kb on + strandat 1756.234 kb on + strandat 1756.236 kb on + strandat 1756.242 kb on - strandat 1756.242 kb on - strandat 1756.242 kb on - strandat 1756.247 kb on + strandat 1756.275 kb on + strandat 1756.278 kb on - strandat 1756.317 kb on + strandat 1756.317 kb on + strandat 1756.317 kb on + strandat 1756.325 kb on - strandat 1756.370 kb on - strandat 1756.371 kb on + strandat 1756.430 kb on + strandat 1756.473 kb on - strand, within PGA1_c16840

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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1,753,973 + -0.2
1,754,884 + +0.2
1,754,884 + -0.2
1,754,884 + +0.3
1,754,905 - +2.1
1,755,002 - +1.2
1,755,026 - PGA1_c16820 0.11 -0.1
1,755,072 + PGA1_c16820 0.19 +1.3
1,755,215 + PGA1_c16820 0.42 -0.7
1,755,233 - PGA1_c16820 0.45 +0.7
1,755,322 + PGA1_c16820 0.59 -0.2
1,755,335 - PGA1_c16820 0.61 -1.0
1,755,336 - PGA1_c16820 0.62 -0.5
1,755,374 + PGA1_c16820 0.68 -0.7
1,755,380 + PGA1_c16820 0.69 +1.0
1,755,392 - PGA1_c16820 0.71 +2.3
1,755,397 - PGA1_c16820 0.72 +0.4
1,755,447 + PGA1_c16820 0.80 +1.0
1,755,449 + PGA1_c16820 0.80 +0.8
1,755,593 + +0.5
1,755,601 - +0.5
1,755,751 + PGA1_c16830 0.26 +0.9
1,755,767 + PGA1_c16830 0.29 +0.9
1,755,850 + PGA1_c16830 0.45 +0.4
1,755,851 + PGA1_c16830 0.45 +1.8
1,755,878 - PGA1_c16830 0.51 +1.1
1,755,950 + PGA1_c16830 0.65 +1.4
1,755,950 + PGA1_c16830 0.65 +0.5
1,755,958 - PGA1_c16830 0.67 +0.4
1,755,996 + PGA1_c16830 0.74 +1.1
1,756,004 - PGA1_c16830 0.76 +1.1
1,756,142 - -0.0
1,756,226 - +0.5
1,756,234 + +0.5
1,756,234 + -0.6
1,756,234 + +0.0
1,756,236 + -0.7
1,756,242 - +0.1
1,756,242 - +0.2
1,756,242 - +0.0
1,756,247 + -0.4
1,756,275 + -0.1
1,756,278 - +0.0
1,756,317 + -0.7
1,756,317 + +1.8
1,756,317 + +0.2
1,756,325 - +0.1
1,756,370 - +0.0
1,756,371 + +1.1
1,756,430 + +0.1
1,756,473 - PGA1_c16840 0.12 +1.3

Or see this region's nucleotide sequence