Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16340 and PGA1_c16350 are separated by 2 nucleotides PGA1_c16350 and PGA1_c16360 are separated by 51 nucleotides PGA1_c16360 and PGA1_c16370 are separated by 94 nucleotides
PGA1_c16340: PGA1_c16340 - Predicted membrane protein, at 1,696,330 to 1,696,908
_c16340
PGA1_c16350: PGA1_c16350 - Disulfide bond formation protein DsbB, at 1,696,911 to 1,697,381
_c16350
PGA1_c16360: PGA1_c16360 - putative transriptional regulator, AsnC family, at 1,697,433 to 1,697,870
_c16360
PGA1_c16370: PGA1_c16370 - arginase ArcA, at 1,697,965 to 1,698,897
_c16370
Position (kb)
1697
1698 Strain fitness (log2 ratio)
-2
-1
0
1 at 1696.489 kb on - strand, within PGA1_c16340 at 1696.520 kb on - strand, within PGA1_c16340 at 1696.665 kb on - strand, within PGA1_c16340 at 1696.679 kb on - strand, within PGA1_c16340 at 1696.679 kb on - strand, within PGA1_c16340 at 1696.838 kb on + strand, within PGA1_c16340 at 1696.849 kb on + strand, within PGA1_c16340 at 1696.900 kb on - strand at 1697.231 kb on + strand, within PGA1_c16350 at 1697.344 kb on - strand at 1697.415 kb on + strand at 1697.423 kb on - strand at 1697.423 kb on - strand at 1697.423 kb on - strand at 1697.423 kb on - strand at 1697.426 kb on + strand at 1697.594 kb on + strand, within PGA1_c16360 at 1697.604 kb on + strand, within PGA1_c16360 at 1697.605 kb on + strand, within PGA1_c16360 at 1697.697 kb on - strand, within PGA1_c16360 at 1697.764 kb on - strand, within PGA1_c16360 at 1697.787 kb on + strand, within PGA1_c16360 at 1697.950 kb on - strand at 1697.959 kb on + strand at 1697.967 kb on - strand at 1697.977 kb on + strand at 1698.029 kb on + strand at 1698.103 kb on - strand, within PGA1_c16370 at 1698.157 kb on + strand, within PGA1_c16370 at 1698.165 kb on - strand, within PGA1_c16370 at 1698.373 kb on + strand, within PGA1_c16370 at 1698.406 kb on - strand, within PGA1_c16370 at 1698.526 kb on + strand, within PGA1_c16370 at 1698.532 kb on - strand, within PGA1_c16370 at 1698.556 kb on - strand, within PGA1_c16370 at 1698.556 kb on - strand, within PGA1_c16370 at 1698.683 kb on - strand, within PGA1_c16370 at 1698.725 kb on + strand, within PGA1_c16370 at 1698.735 kb on - strand, within PGA1_c16370 at 1698.845 kb on + strand at 1698.850 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 1,696,489 - PGA1_c16340 0.27 -0.8 1,696,520 - PGA1_c16340 0.33 -2.4 1,696,665 - PGA1_c16340 0.58 -2.2 1,696,679 - PGA1_c16340 0.60 -2.0 1,696,679 - PGA1_c16340 0.60 -1.0 1,696,838 + PGA1_c16340 0.88 -2.6 1,696,849 + PGA1_c16340 0.90 -1.8 1,696,900 - -0.3 1,697,231 + PGA1_c16350 0.68 -0.2 1,697,344 - -0.6 1,697,415 + -0.3 1,697,423 - +0.4 1,697,423 - -0.5 1,697,423 - -0.6 1,697,423 - -1.1 1,697,426 + -0.4 1,697,594 + PGA1_c16360 0.37 +0.6 1,697,604 + PGA1_c16360 0.39 -0.8 1,697,605 + PGA1_c16360 0.39 +0.3 1,697,697 - PGA1_c16360 0.60 -0.8 1,697,764 - PGA1_c16360 0.76 +1.1 1,697,787 + PGA1_c16360 0.81 +0.8 1,697,950 - -0.5 1,697,959 + -0.1 1,697,967 - -0.9 1,697,977 + +1.2 1,698,029 + +1.0 1,698,103 - PGA1_c16370 0.15 +0.5 1,698,157 + PGA1_c16370 0.21 -0.1 1,698,165 - PGA1_c16370 0.21 +1.1 1,698,373 + PGA1_c16370 0.44 -0.3 1,698,406 - PGA1_c16370 0.47 -0.6 1,698,526 + PGA1_c16370 0.60 -0.4 1,698,532 - PGA1_c16370 0.61 +0.5 1,698,556 - PGA1_c16370 0.63 +0.4 1,698,556 - PGA1_c16370 0.63 +0.0 1,698,683 - PGA1_c16370 0.77 +0.1 1,698,725 + PGA1_c16370 0.81 -1.8 1,698,735 - PGA1_c16370 0.83 -1.0 1,698,845 + +0.5 1,698,850 + +0.9
Or see this region's nucleotide sequence