Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c15640

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c15630 and PGA1_c15640 are separated by 24 nucleotidesPGA1_c15640 and PGA1_c15660 are separated by 141 nucleotidesPGA1_c15660 and PGA1_c15670 are separated by 30 nucleotides PGA1_c15630: PGA1_c15630 - putative aminoglycoside phosphotransferase, at 1,624,260 to 1,625,336 _c15630 PGA1_c15640: PGA1_c15640 - transcriptional regulator, IclR family, at 1,625,361 to 1,626,155 _c15640 PGA1_c15660: PGA1_c15660 - enoyl-CoA hydratase/isomerase family protein, at 1,626,297 to 1,627,049 _c15660 PGA1_c15670: PGA1_c15670 - putative beta-lactamase, at 1,627,080 to 1,628,291 _c15670 Position (kb) 1625 1626 1627Strain fitness (log2 ratio) -2 -1 0 1 2at 1624.413 kb on + strand, within PGA1_c15630at 1624.417 kb on - strand, within PGA1_c15630at 1624.731 kb on - strand, within PGA1_c15630at 1624.738 kb on + strand, within PGA1_c15630at 1624.746 kb on - strand, within PGA1_c15630at 1624.893 kb on - strand, within PGA1_c15630at 1624.900 kb on + strand, within PGA1_c15630at 1624.976 kb on - strand, within PGA1_c15630at 1624.976 kb on - strand, within PGA1_c15630at 1624.982 kb on + strand, within PGA1_c15630at 1625.000 kb on + strand, within PGA1_c15630at 1625.000 kb on + strand, within PGA1_c15630at 1625.000 kb on + strand, within PGA1_c15630at 1625.005 kb on + strand, within PGA1_c15630at 1625.008 kb on - strand, within PGA1_c15630at 1625.008 kb on - strand, within PGA1_c15630at 1625.010 kb on + strand, within PGA1_c15630at 1625.013 kb on - strand, within PGA1_c15630at 1625.207 kb on - strand, within PGA1_c15630at 1625.215 kb on - strand, within PGA1_c15630at 1625.472 kb on - strand, within PGA1_c15640at 1625.474 kb on + strand, within PGA1_c15640at 1625.474 kb on + strand, within PGA1_c15640at 1625.479 kb on + strand, within PGA1_c15640at 1625.502 kb on + strand, within PGA1_c15640at 1625.526 kb on + strand, within PGA1_c15640at 1625.533 kb on + strand, within PGA1_c15640at 1625.534 kb on - strand, within PGA1_c15640at 1625.539 kb on - strand, within PGA1_c15640at 1625.541 kb on - strand, within PGA1_c15640at 1625.541 kb on - strand, within PGA1_c15640at 1625.541 kb on - strand, within PGA1_c15640at 1625.820 kb on + strand, within PGA1_c15640at 1625.820 kb on + strand, within PGA1_c15640at 1625.820 kb on + strand, within PGA1_c15640at 1625.820 kb on + strand, within PGA1_c15640at 1625.828 kb on - strand, within PGA1_c15640at 1625.890 kb on + strand, within PGA1_c15640at 1625.890 kb on + strand, within PGA1_c15640at 1625.916 kb on + strand, within PGA1_c15640at 1625.916 kb on + strand, within PGA1_c15640at 1625.942 kb on + strand, within PGA1_c15640at 1626.043 kb on + strand, within PGA1_c15640at 1626.057 kb on - strand, within PGA1_c15640at 1626.124 kb on - strandat 1626.127 kb on - strandat 1626.144 kb on - strandat 1626.164 kb on - strandat 1626.199 kb on + strandat 1626.199 kb on + strandat 1626.199 kb on + strandat 1626.199 kb on + strandat 1626.207 kb on - strandat 1626.207 kb on - strandat 1626.207 kb on - strandat 1626.217 kb on - strandat 1626.269 kb on + strandat 1626.297 kb on - strandat 1626.423 kb on - strand, within PGA1_c15660at 1626.489 kb on + strand, within PGA1_c15660at 1626.505 kb on - strand, within PGA1_c15660at 1626.543 kb on + strand, within PGA1_c15660at 1626.565 kb on + strand, within PGA1_c15660at 1626.573 kb on + strand, within PGA1_c15660at 1626.581 kb on - strand, within PGA1_c15660at 1626.779 kb on + strand, within PGA1_c15660at 1626.779 kb on + strand, within PGA1_c15660at 1626.787 kb on - strand, within PGA1_c15660at 1626.861 kb on + strand, within PGA1_c15660at 1626.869 kb on - strand, within PGA1_c15660at 1626.970 kb on - strand, within PGA1_c15660at 1626.970 kb on - strand, within PGA1_c15660at 1627.020 kb on + strandat 1627.079 kb on + strandat 1627.079 kb on + strandat 1627.087 kb on - strandat 1627.103 kb on + strandat 1627.103 kb on + strandat 1627.103 kb on + strandat 1627.103 kb on + strandat 1627.103 kb on + strandat 1627.103 kb on + strandat 1627.103 kb on + strandat 1627.108 kb on + strandat 1627.111 kb on - strandat 1627.111 kb on - strandat 1627.111 kb on - strandat 1627.111 kb on - strandat 1627.111 kb on - strandat 1627.121 kb on + strandat 1627.121 kb on + strandat 1627.134 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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1,624,413 + PGA1_c15630 0.14 -0.5
1,624,417 - PGA1_c15630 0.15 -0.7
1,624,731 - PGA1_c15630 0.44 -1.1
1,624,738 + PGA1_c15630 0.44 -0.2
1,624,746 - PGA1_c15630 0.45 -0.6
1,624,893 - PGA1_c15630 0.59 +0.2
1,624,900 + PGA1_c15630 0.59 -0.2
1,624,976 - PGA1_c15630 0.66 -1.9
1,624,976 - PGA1_c15630 0.66 +1.2
1,624,982 + PGA1_c15630 0.67 -1.0
1,625,000 + PGA1_c15630 0.69 +0.4
1,625,000 + PGA1_c15630 0.69 +0.4
1,625,000 + PGA1_c15630 0.69 -0.6
1,625,005 + PGA1_c15630 0.69 +0.6
1,625,008 - PGA1_c15630 0.69 -0.5
1,625,008 - PGA1_c15630 0.69 -0.2
1,625,010 + PGA1_c15630 0.70 -0.9
1,625,013 - PGA1_c15630 0.70 +0.5
1,625,207 - PGA1_c15630 0.88 +0.9
1,625,215 - PGA1_c15630 0.89 -0.8
1,625,472 - PGA1_c15640 0.14 -1.2
1,625,474 + PGA1_c15640 0.14 -0.9
1,625,474 + PGA1_c15640 0.14 +0.8
1,625,479 + PGA1_c15640 0.15 +0.8
1,625,502 + PGA1_c15640 0.18 +1.8
1,625,526 + PGA1_c15640 0.21 -1.0
1,625,533 + PGA1_c15640 0.22 +0.3
1,625,534 - PGA1_c15640 0.22 +0.6
1,625,539 - PGA1_c15640 0.22 +0.2
1,625,541 - PGA1_c15640 0.23 +0.3
1,625,541 - PGA1_c15640 0.23 -0.2
1,625,541 - PGA1_c15640 0.23 +0.5
1,625,820 + PGA1_c15640 0.58 +0.9
1,625,820 + PGA1_c15640 0.58 -1.2
1,625,820 + PGA1_c15640 0.58 -1.5
1,625,820 + PGA1_c15640 0.58 +1.3
1,625,828 - PGA1_c15640 0.59 +0.6
1,625,890 + PGA1_c15640 0.67 +0.3
1,625,890 + PGA1_c15640 0.67 -1.3
1,625,916 + PGA1_c15640 0.70 -0.6
1,625,916 + PGA1_c15640 0.70 -0.3
1,625,942 + PGA1_c15640 0.73 -0.4
1,626,043 + PGA1_c15640 0.86 +0.5
1,626,057 - PGA1_c15640 0.88 +1.4
1,626,124 - -0.8
1,626,127 - -0.2
1,626,144 - +0.9
1,626,164 - -0.4
1,626,199 + -0.0
1,626,199 + +0.3
1,626,199 + +0.8
1,626,199 + -0.3
1,626,207 - -1.0
1,626,207 - -0.5
1,626,207 - +0.2
1,626,217 - +0.6
1,626,269 + -0.6
1,626,297 - +0.5
1,626,423 - PGA1_c15660 0.17 +0.4
1,626,489 + PGA1_c15660 0.25 -0.3
1,626,505 - PGA1_c15660 0.28 +0.4
1,626,543 + PGA1_c15660 0.33 +0.2
1,626,565 + PGA1_c15660 0.36 -0.2
1,626,573 + PGA1_c15660 0.37 +1.1
1,626,581 - PGA1_c15660 0.38 +1.5
1,626,779 + PGA1_c15660 0.64 +0.9
1,626,779 + PGA1_c15660 0.64 -0.5
1,626,787 - PGA1_c15660 0.65 +0.9
1,626,861 + PGA1_c15660 0.75 +1.0
1,626,869 - PGA1_c15660 0.76 -0.4
1,626,970 - PGA1_c15660 0.89 -0.1
1,626,970 - PGA1_c15660 0.89 -0.5
1,627,020 + +0.4
1,627,079 + +0.2
1,627,079 + -0.2
1,627,087 - +1.0
1,627,103 + -0.1
1,627,103 + +0.1
1,627,103 + -0.2
1,627,103 + -0.4
1,627,103 + -0.2
1,627,103 + +0.4
1,627,103 + -0.9
1,627,108 + +0.1
1,627,111 - -0.3
1,627,111 - +1.2
1,627,111 - +0.2
1,627,111 - -0.7
1,627,111 - +0.6
1,627,121 + -0.4
1,627,121 + +0.3
1,627,134 - -0.0

Or see this region's nucleotide sequence