Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c15490

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c15470 and PGA1_c15480 are separated by 11 nucleotidesPGA1_c15480 and PGA1_c15490 are separated by 194 nucleotidesPGA1_c15490 and PGA1_c15500 are separated by 110 nucleotides PGA1_c15470: PGA1_c15470 - 50S ribosomal protein L21, at 1,610,483 to 1,611,073 _c15470 PGA1_c15480: PGA1_c15480 - 50S ribosomal protein L27, at 1,611,085 to 1,611,354 _c15480 PGA1_c15490: PGA1_c15490 - putative N-acetyltransferase, at 1,611,549 to 1,612,088 _c15490 PGA1_c15500: PGA1_c15500 - GTP-binding protein, at 1,612,199 to 1,613,233 _c15500 Position (kb) 1611 1612 1613Strain fitness (log2 ratio) -2 -1 0 1at 1611.453 kb on + strandat 1611.461 kb on - strandat 1611.469 kb on + strandat 1611.471 kb on + strandat 1611.539 kb on + strandat 1611.546 kb on + strandat 1611.553 kb on - strandat 1611.576 kb on - strandat 1611.622 kb on + strand, within PGA1_c15490at 1611.682 kb on - strand, within PGA1_c15490at 1611.687 kb on + strand, within PGA1_c15490at 1611.764 kb on - strand, within PGA1_c15490at 1611.798 kb on + strand, within PGA1_c15490at 1611.806 kb on - strand, within PGA1_c15490at 1611.814 kb on - strand, within PGA1_c15490at 1611.827 kb on + strand, within PGA1_c15490at 1611.892 kb on + strand, within PGA1_c15490at 1611.892 kb on + strand, within PGA1_c15490at 1611.900 kb on - strand, within PGA1_c15490at 1611.900 kb on - strand, within PGA1_c15490at 1611.953 kb on - strand, within PGA1_c15490at 1611.990 kb on - strand, within PGA1_c15490at 1611.995 kb on - strand, within PGA1_c15490at 1611.995 kb on - strand, within PGA1_c15490at 1612.023 kb on + strand, within PGA1_c15490at 1612.070 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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1,611,453 + +0.2
1,611,461 - -1.7
1,611,469 + +0.6
1,611,471 + -0.8
1,611,539 + -0.8
1,611,546 + -0.8
1,611,553 - -1.7
1,611,576 - -0.8
1,611,622 + PGA1_c15490 0.14 -0.9
1,611,682 - PGA1_c15490 0.25 -1.1
1,611,687 + PGA1_c15490 0.26 -0.9
1,611,764 - PGA1_c15490 0.40 -0.1
1,611,798 + PGA1_c15490 0.46 -1.4
1,611,806 - PGA1_c15490 0.48 +0.2
1,611,814 - PGA1_c15490 0.49 -2.2
1,611,827 + PGA1_c15490 0.51 -1.3
1,611,892 + PGA1_c15490 0.64 -0.5
1,611,892 + PGA1_c15490 0.64 -0.4
1,611,900 - PGA1_c15490 0.65 -1.8
1,611,900 - PGA1_c15490 0.65 -0.5
1,611,953 - PGA1_c15490 0.75 -1.4
1,611,990 - PGA1_c15490 0.82 -0.5
1,611,995 - PGA1_c15490 0.83 +0.8
1,611,995 - PGA1_c15490 0.83 +0.6
1,612,023 + PGA1_c15490 0.88 -0.8
1,612,070 - +0.8

Or see this region's nucleotide sequence