Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01250 and PGA1_c01260 are separated by 333 nucleotides PGA1_c01260 and PGA1_c01270 are separated by 3 nucleotides PGA1_c01270 and PGA1_c01280 are separated by 67 nucleotides
PGA1_c01250: PGA1_c01250 - electron transfer flavoprotein subunit beta, at 116,927 to 117,685
_c01250
PGA1_c01260: PGA1_c01260 - putative cobalamin adenosyltransferase, at 118,019 to 118,591
_c01260
PGA1_c01270: PGA1_c01270 - Hypoxia induced protein conserved region., at 118,595 to 118,801
_c01270
PGA1_c01280: PGA1_c01280 - short-chain dehydrogenase/reductase, at 118,869 to 119,699
_c01280
Position (kb) 118
119 Strain fitness (log2 ratio) -2
-1
0
1 at 117.836 kb on + strand at 117.872 kb on + strand at 117.909 kb on - strand at 118.072 kb on - strand at 118.237 kb on + strand, within PGA1_c01260 at 118.347 kb on + strand, within PGA1_c01260 at 118.367 kb on + strand, within PGA1_c01260 at 118.508 kb on + strand, within PGA1_c01260 at 118.594 kb on - strand at 118.602 kb on + strand at 118.618 kb on + strand, within PGA1_c01270 at 118.618 kb on + strand, within PGA1_c01270 at 118.634 kb on + strand, within PGA1_c01270 at 118.634 kb on + strand, within PGA1_c01270 at 118.642 kb on - strand, within PGA1_c01270 at 118.642 kb on - strand, within PGA1_c01270 at 118.642 kb on - strand, within PGA1_c01270 at 118.721 kb on + strand, within PGA1_c01270 at 118.829 kb on + strand at 118.949 kb on - strand at 118.949 kb on - strand at 119.004 kb on + strand, within PGA1_c01280 at 119.012 kb on - strand, within PGA1_c01280 at 119.017 kb on + strand, within PGA1_c01280 at 119.027 kb on - strand, within PGA1_c01280 at 119.041 kb on + strand, within PGA1_c01280 at 119.062 kb on - strand, within PGA1_c01280 at 119.202 kb on + strand, within PGA1_c01280 at 119.224 kb on + strand, within PGA1_c01280 at 119.232 kb on - strand, within PGA1_c01280 at 119.267 kb on + strand, within PGA1_c01280 at 119.329 kb on - strand, within PGA1_c01280 at 119.348 kb on + strand, within PGA1_c01280 at 119.361 kb on + strand, within PGA1_c01280 at 119.361 kb on + strand, within PGA1_c01280 at 119.432 kb on - strand, within PGA1_c01280 at 119.466 kb on - strand, within PGA1_c01280 at 119.493 kb on + strand, within PGA1_c01280 at 119.493 kb on + strand, within PGA1_c01280 at 119.532 kb on - strand, within PGA1_c01280 at 119.535 kb on + strand, within PGA1_c01280 at 119.543 kb on - strand, within PGA1_c01280 at 119.564 kb on - strand, within PGA1_c01280
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 117,836 + +0.2 117,872 + +1.7 117,909 - -0.7 118,072 - -2.4 118,237 + PGA1_c01260 0.38 -1.9 118,347 + PGA1_c01260 0.57 -1.7 118,367 + PGA1_c01260 0.61 -2.5 118,508 + PGA1_c01260 0.85 -1.7 118,594 - +0.1 118,602 + +0.0 118,618 + PGA1_c01270 0.11 +0.1 118,618 + PGA1_c01270 0.11 +0.3 118,634 + PGA1_c01270 0.19 -0.8 118,634 + PGA1_c01270 0.19 -2.2 118,642 - PGA1_c01270 0.23 +0.5 118,642 - PGA1_c01270 0.23 -1.4 118,642 - PGA1_c01270 0.23 -0.3 118,721 + PGA1_c01270 0.61 +0.5 118,829 + +1.2 118,949 - +0.1 118,949 - -0.3 119,004 + PGA1_c01280 0.16 -1.2 119,012 - PGA1_c01280 0.17 -0.6 119,017 + PGA1_c01280 0.18 -0.2 119,027 - PGA1_c01280 0.19 -0.0 119,041 + PGA1_c01280 0.21 +1.1 119,062 - PGA1_c01280 0.23 -0.3 119,202 + PGA1_c01280 0.40 +0.1 119,224 + PGA1_c01280 0.43 -0.4 119,232 - PGA1_c01280 0.44 +0.2 119,267 + PGA1_c01280 0.48 +0.6 119,329 - PGA1_c01280 0.55 +0.2 119,348 + PGA1_c01280 0.58 +0.6 119,361 + PGA1_c01280 0.59 +0.3 119,361 + PGA1_c01280 0.59 -0.8 119,432 - PGA1_c01280 0.68 -0.2 119,466 - PGA1_c01280 0.72 +0.5 119,493 + PGA1_c01280 0.75 -0.2 119,493 + PGA1_c01280 0.75 +0.0 119,532 - PGA1_c01280 0.80 +0.2 119,535 + PGA1_c01280 0.80 -0.2 119,543 - PGA1_c01280 0.81 +0.2 119,564 - PGA1_c01280 0.84 -0.9
Or see this region's nucleotide sequence