Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0272

Experiment: BHIS with 5-Fluorouracil 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0271 and BT0272 are separated by 23 nucleotidesBT0272 and BT0273 are separated by 24 nucleotides BT0271: BT0271 - hypothetical protein (NCBI ptt file), at 309,707 to 310,582 BT0271 BT0272: BT0272 - TonB-dependent receptor for (+)-arabinogalactan (SusC-like) (from data), at 310,606 to 313,776 BT0272 BT0273: BT0273 - Outer membrane binding protein for (+)-arabinogalactan (SusD-like) (from data), at 313,801 to 315,312 BT0273 Position (kb) 310 311 312 313 314Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 309.842 kb on - strand, within BT0271at 309.842 kb on - strand, within BT0271at 310.042 kb on + strand, within BT0271at 310.086 kb on + strand, within BT0271at 310.089 kb on - strand, within BT0271at 310.129 kb on + strand, within BT0271at 310.129 kb on + strand, within BT0271at 310.257 kb on - strand, within BT0271at 310.357 kb on - strand, within BT0271at 310.409 kb on - strand, within BT0271at 310.427 kb on - strand, within BT0271at 310.432 kb on - strand, within BT0271at 310.490 kb on - strand, within BT0271at 310.536 kb on + strandat 310.537 kb on - strandat 310.581 kb on - strandat 310.621 kb on - strandat 310.621 kb on - strandat 310.725 kb on + strandat 311.179 kb on - strand, within BT0272at 311.179 kb on - strand, within BT0272at 311.371 kb on + strand, within BT0272at 311.583 kb on + strand, within BT0272at 311.645 kb on - strand, within BT0272at 311.766 kb on + strand, within BT0272at 311.834 kb on + strand, within BT0272at 311.845 kb on - strand, within BT0272at 311.929 kb on + strand, within BT0272at 311.930 kb on - strand, within BT0272at 311.987 kb on + strand, within BT0272at 312.004 kb on - strand, within BT0272at 312.004 kb on - strand, within BT0272at 312.010 kb on - strand, within BT0272at 312.016 kb on + strand, within BT0272at 312.017 kb on - strand, within BT0272at 312.033 kb on + strand, within BT0272at 312.053 kb on + strand, within BT0272at 312.054 kb on - strand, within BT0272at 312.054 kb on - strand, within BT0272at 312.065 kb on - strand, within BT0272at 312.153 kb on + strand, within BT0272at 312.157 kb on + strand, within BT0272at 312.259 kb on - strand, within BT0272at 312.289 kb on - strand, within BT0272at 312.289 kb on - strand, within BT0272at 312.291 kb on - strand, within BT0272at 312.291 kb on - strand, within BT0272at 312.291 kb on - strand, within BT0272at 312.352 kb on - strand, within BT0272at 312.367 kb on - strand, within BT0272at 312.369 kb on - strand, within BT0272at 312.401 kb on - strand, within BT0272at 312.554 kb on + strand, within BT0272at 312.555 kb on - strand, within BT0272at 312.567 kb on + strand, within BT0272at 312.600 kb on - strand, within BT0272at 312.645 kb on + strand, within BT0272at 312.649 kb on - strand, within BT0272at 312.655 kb on - strand, within BT0272at 312.728 kb on + strand, within BT0272at 312.742 kb on - strand, within BT0272at 312.744 kb on + strand, within BT0272at 312.861 kb on + strand, within BT0272at 312.949 kb on - strand, within BT0272at 313.054 kb on + strand, within BT0272at 313.055 kb on - strand, within BT0272at 313.061 kb on - strand, within BT0272at 313.070 kb on + strand, within BT0272at 313.188 kb on - strand, within BT0272at 313.188 kb on - strand, within BT0272at 313.188 kb on - strand, within BT0272at 313.230 kb on - strand, within BT0272at 313.423 kb on - strand, within BT0272at 313.433 kb on - strand, within BT0272at 313.453 kb on - strand, within BT0272at 313.459 kb on + strand, within BT0272at 313.460 kb on - strandat 313.585 kb on - strandat 313.654 kb on - strandat 313.660 kb on - strandat 313.791 kb on - strandat 313.818 kb on - strandat 313.999 kb on - strand, within BT0273at 314.003 kb on - strand, within BT0273at 314.014 kb on - strand, within BT0273at 314.039 kb on - strand, within BT0273at 314.057 kb on - strand, within BT0273at 314.101 kb on - strand, within BT0273at 314.118 kb on + strand, within BT0273at 314.130 kb on - strand, within BT0273at 314.153 kb on - strand, within BT0273at 314.283 kb on - strand, within BT0273at 314.322 kb on + strand, within BT0273at 314.434 kb on + strand, within BT0273at 314.546 kb on - strand, within BT0273at 314.600 kb on - strand, within BT0273at 314.600 kb on - strand, within BT0273at 314.763 kb on - strand, within BT0273

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with 5-Fluorouracil 0.2 mM
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309,842 - BT0271 0.15 +1.4
309,842 - BT0271 0.15 -1.8
310,042 + BT0271 0.38 +0.8
310,086 + BT0271 0.43 +1.5
310,089 - BT0271 0.44 -1.9
310,129 + BT0271 0.48 +0.8
310,129 + BT0271 0.48 -2.8
310,257 - BT0271 0.63 +3.6
310,357 - BT0271 0.74 -2.5
310,409 - BT0271 0.80 -1.2
310,427 - BT0271 0.82 -2.6
310,432 - BT0271 0.83 +2.1
310,490 - BT0271 0.89 -2.5
310,536 + +2.1
310,537 - -0.2
310,581 - +1.1
310,621 - -0.3
310,621 - -0.2
310,725 + -1.9
311,179 - BT0272 0.18 -2.1
311,179 - BT0272 0.18 -0.8
311,371 + BT0272 0.24 -1.8
311,583 + BT0272 0.31 -0.2
311,645 - BT0272 0.33 +0.1
311,766 + BT0272 0.37 +1.1
311,834 + BT0272 0.39 -0.9
311,845 - BT0272 0.39 -0.6
311,929 + BT0272 0.42 -2.2
311,930 - BT0272 0.42 +2.2
311,987 + BT0272 0.44 -1.2
312,004 - BT0272 0.44 -0.9
312,004 - BT0272 0.44 -1.2
312,010 - BT0272 0.44 -1.8
312,016 + BT0272 0.44 -1.2
312,017 - BT0272 0.44 -1.0
312,033 + BT0272 0.45 -1.2
312,053 + BT0272 0.46 +1.1
312,054 - BT0272 0.46 -2.5
312,054 - BT0272 0.46 -1.8
312,065 - BT0272 0.46 +2.0
312,153 + BT0272 0.49 -2.2
312,157 + BT0272 0.49 -1.2
312,259 - BT0272 0.52 +0.8
312,289 - BT0272 0.53 -2.2
312,289 - BT0272 0.53 -2.8
312,291 - BT0272 0.53 -1.2
312,291 - BT0272 0.53 -1.8
312,291 - BT0272 0.53 -0.2
312,352 - BT0272 0.55 -1.3
312,367 - BT0272 0.56 +0.4
312,369 - BT0272 0.56 -2.5
312,401 - BT0272 0.57 -1.5
312,554 + BT0272 0.61 -1.5
312,555 - BT0272 0.61 -4.2
312,567 + BT0272 0.62 -0.2
312,600 - BT0272 0.63 +1.2
312,645 + BT0272 0.64 +1.6
312,649 - BT0272 0.64 -1.2
312,655 - BT0272 0.65 -2.1
312,728 + BT0272 0.67 -1.5
312,742 - BT0272 0.67 +1.1
312,744 + BT0272 0.67 -1.8
312,861 + BT0272 0.71 +0.4
312,949 - BT0272 0.74 -2.7
313,054 + BT0272 0.77 -2.2
313,055 - BT0272 0.77 -1.3
313,061 - BT0272 0.77 +1.8
313,070 + BT0272 0.78 +1.4
313,188 - BT0272 0.81 -3.5
313,188 - BT0272 0.81 -0.2
313,188 - BT0272 0.81 +1.8
313,230 - BT0272 0.83 +1.9
313,423 - BT0272 0.89 -1.2
313,433 - BT0272 0.89 +1.1
313,453 - BT0272 0.90 -2.3
313,459 + BT0272 0.90 +0.8
313,460 - +1.8
313,585 - -2.0
313,654 - -4.4
313,660 - +0.2
313,791 - -1.3
313,818 - -0.6
313,999 - BT0273 0.13 -1.2
314,003 - BT0273 0.13 -3.5
314,014 - BT0273 0.14 +2.1
314,039 - BT0273 0.16 -0.2
314,057 - BT0273 0.17 -3.0
314,101 - BT0273 0.20 +0.8
314,118 + BT0273 0.21 -0.2
314,130 - BT0273 0.22 -0.3
314,153 - BT0273 0.23 +0.5
314,283 - BT0273 0.32 +0.1
314,322 + BT0273 0.34 +0.8
314,434 + BT0273 0.42 -2.9
314,546 - BT0273 0.49 +1.4
314,600 - BT0273 0.53 +0.8
314,600 - BT0273 0.53 +1.4
314,763 - BT0273 0.64 +2.8

Or see this region's nucleotide sequence