Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01995

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01994 and CCNA_01995 overlap by 13 nucleotidesCCNA_01995 and CCNA_01996 overlap by 41 nucleotidesCCNA_01996 and CCNA_01997 are separated by 51 nucleotides CCNA_01994: CCNA_01994 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 2,140,916 to 2,142,115 _01994 CCNA_01995: CCNA_01995 - phosphatidate cytidylyltransferase, at 2,142,103 to 2,142,948 _01995 CCNA_01996: CCNA_01996 - undecaprenyl pyrophosphate synthetase, at 2,142,908 to 2,143,687 _01996 CCNA_01997: CCNA_01997 - ribosome recycling factor (RRF), at 2,143,739 to 2,144,305 _01997 Position (kb) 2142 2143Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2142.113 kb on + strandat 2142.337 kb on - strand, within CCNA_01995at 2142.337 kb on - strand, within CCNA_01995at 2142.904 kb on - strandat 2143.710 kb on - strandat 2143.737 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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2,142,113 + +2.8
2,142,337 - CCNA_01995 0.28 -2.2
2,142,337 - CCNA_01995 0.28 -1.5
2,142,904 - +0.3
2,143,710 - +0.3
2,143,737 + -1.0

Or see this region's nucleotide sequence