Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00778

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00777 and CCNA_00778 are separated by 159 nucleotidesCCNA_00778 and CCNA_00779 are separated by 566 nucleotidesCCNA_00779 and CCNA_00780 are separated by 13 nucleotides CCNA_00777: CCNA_00777 - PAS family GGDEF/EAL protein, at 835,363 to 837,786 _00777 CCNA_00778: CCNA_00778 - GTP-binding protein TypA/BipA, at 837,946 to 839,778 _00778 CCNA_00779: CCNA_00779 - TonB superfamily protein, at 840,345 to 840,746 _00779 CCNA_00780: CCNA_00780 - N-formylglutamate deformylase, at 840,760 to 841,686 _00780 Position (kb) 837 838 839 840Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 836.955 kb on + strand, within CCNA_00777at 836.955 kb on + strand, within CCNA_00777at 836.963 kb on - strand, within CCNA_00777at 836.978 kb on - strand, within CCNA_00777at 837.022 kb on + strand, within CCNA_00777at 837.054 kb on + strand, within CCNA_00777at 837.093 kb on + strandat 837.137 kb on + strand, within CCNA_00777at 837.152 kb on + strand, within CCNA_00777at 837.184 kb on - strand, within CCNA_00777at 837.192 kb on - strand, within CCNA_00777at 837.213 kb on - strand, within CCNA_00777at 837.276 kb on - strand, within CCNA_00777at 837.329 kb on - strand, within CCNA_00777at 837.388 kb on - strand, within CCNA_00777at 837.393 kb on - strand, within CCNA_00777at 837.393 kb on - strand, within CCNA_00777at 837.397 kb on + strand, within CCNA_00777at 837.422 kb on + strand, within CCNA_00777at 837.422 kb on + strand, within CCNA_00777at 837.422 kb on + strand, within CCNA_00777at 837.422 kb on + strand, within CCNA_00777at 837.422 kb on + strand, within CCNA_00777at 837.422 kb on + strand, within CCNA_00777at 837.422 kb on + strand, within CCNA_00777at 837.422 kb on + strand, within CCNA_00777at 837.430 kb on - strand, within CCNA_00777at 837.430 kb on - strand, within CCNA_00777at 837.430 kb on - strand, within CCNA_00777at 837.430 kb on - strand, within CCNA_00777at 837.430 kb on - strand, within CCNA_00777at 837.430 kb on - strand, within CCNA_00777at 837.430 kb on - strand, within CCNA_00777at 837.430 kb on - strand, within CCNA_00777at 837.430 kb on - strand, within CCNA_00777at 837.430 kb on - strand, within CCNA_00777at 837.430 kb on - strand, within CCNA_00777at 837.430 kb on - strand, within CCNA_00777at 837.458 kb on + strand, within CCNA_00777at 837.505 kb on + strand, within CCNA_00777at 837.510 kb on + strand, within CCNA_00777at 837.513 kb on - strand, within CCNA_00777at 837.516 kb on + strand, within CCNA_00777at 837.520 kb on - strand, within CCNA_00777at 837.524 kb on - strand, within CCNA_00777at 837.553 kb on + strandat 837.566 kb on - strandat 837.595 kb on + strandat 837.615 kb on + strandat 837.615 kb on + strandat 837.643 kb on + strandat 837.670 kb on + strandat 837.684 kb on - strandat 837.716 kb on + strandat 837.716 kb on - strandat 837.792 kb on + strandat 837.800 kb on - strandat 837.800 kb on - strandat 837.800 kb on - strandat 837.836 kb on + strandat 837.861 kb on - strandat 837.861 kb on - strandat 837.910 kb on + strandat 837.910 kb on + strandat 837.918 kb on - strandat 837.982 kb on + strandat 837.982 kb on + strandat 837.990 kb on - strandat 837.990 kb on - strandat 838.002 kb on + strandat 838.022 kb on + strandat 838.065 kb on - strandat 838.070 kb on - strandat 838.070 kb on - strandat 838.078 kb on - strandat 838.113 kb on - strandat 838.158 kb on + strand, within CCNA_00778at 838.245 kb on + strand, within CCNA_00778at 838.245 kb on + strand, within CCNA_00778at 838.245 kb on + strand, within CCNA_00778at 838.252 kb on + strand, within CCNA_00778at 838.252 kb on + strand, within CCNA_00778at 838.253 kb on - strand, within CCNA_00778at 838.304 kb on + strand, within CCNA_00778at 838.304 kb on + strand, within CCNA_00778at 838.304 kb on + strand, within CCNA_00778at 838.304 kb on + strand, within CCNA_00778at 838.312 kb on - strand, within CCNA_00778at 838.312 kb on - strand, within CCNA_00778at 838.312 kb on - strand, within CCNA_00778at 838.368 kb on - strand, within CCNA_00778at 838.370 kb on + strandat 838.432 kb on + strand, within CCNA_00778at 838.455 kb on - strand, within CCNA_00778at 838.455 kb on - strand, within CCNA_00778at 838.477 kb on - strand, within CCNA_00778at 838.546 kb on + strand, within CCNA_00778at 838.597 kb on - strand, within CCNA_00778at 838.631 kb on - strand, within CCNA_00778at 838.631 kb on - strand, within CCNA_00778at 838.746 kb on - strand, within CCNA_00778at 838.786 kb on + strand, within CCNA_00778at 838.790 kb on - strand, within CCNA_00778at 838.816 kb on + strand, within CCNA_00778at 838.824 kb on - strand, within CCNA_00778at 838.872 kb on - strand, within CCNA_00778at 838.895 kb on - strand, within CCNA_00778at 838.899 kb on + strand, within CCNA_00778at 838.924 kb on - strand, within CCNA_00778at 838.996 kb on + strand, within CCNA_00778at 838.996 kb on + strand, within CCNA_00778at 839.051 kb on + strand, within CCNA_00778at 839.052 kb on - strand, within CCNA_00778at 839.052 kb on - strand, within CCNA_00778at 839.052 kb on - strand, within CCNA_00778at 839.052 kb on - strand, within CCNA_00778at 839.083 kb on - strand, within CCNA_00778at 839.126 kb on + strand, within CCNA_00778at 839.226 kb on + strand, within CCNA_00778at 839.252 kb on + strand, within CCNA_00778at 839.255 kb on - strand, within CCNA_00778at 839.255 kb on - strand, within CCNA_00778at 839.279 kb on + strand, within CCNA_00778at 839.287 kb on - strand, within CCNA_00778at 839.287 kb on - strand, within CCNA_00778at 839.287 kb on - strand, within CCNA_00778at 839.296 kb on + strand, within CCNA_00778at 839.312 kb on - strand, within CCNA_00778at 839.324 kb on + strand, within CCNA_00778at 839.359 kb on + strand, within CCNA_00778at 839.367 kb on - strand, within CCNA_00778at 839.434 kb on - strand, within CCNA_00778at 839.434 kb on - strand, within CCNA_00778at 839.449 kb on - strand, within CCNA_00778at 839.449 kb on - strand, within CCNA_00778at 839.449 kb on - strand, within CCNA_00778at 839.499 kb on - strand, within CCNA_00778at 839.585 kb on + strand, within CCNA_00778at 839.596 kb on - strandat 839.596 kb on - strandat 839.629 kb on - strandat 839.677 kb on - strandat 839.693 kb on + strandat 839.724 kb on - strandat 839.802 kb on + strandat 839.810 kb on - strandat 839.817 kb on - strandat 839.832 kb on - strandat 839.884 kb on - strandat 840.100 kb on - strandat 840.244 kb on + strandat 840.244 kb on + strandat 840.250 kb on - strandat 840.262 kb on + strandat 840.271 kb on + strandat 840.319 kb on - strandat 840.350 kb on - strandat 840.385 kb on + strandat 840.385 kb on + strandat 840.393 kb on - strand, within CCNA_00779at 840.393 kb on - strand, within CCNA_00779at 840.395 kb on + strand, within CCNA_00779at 840.403 kb on - strand, within CCNA_00779at 840.450 kb on + strand, within CCNA_00779at 840.452 kb on + strand, within CCNA_00779at 840.466 kb on + strand, within CCNA_00779at 840.474 kb on - strand, within CCNA_00779at 840.488 kb on + strand, within CCNA_00779at 840.515 kb on + strand, within CCNA_00779at 840.523 kb on - strand, within CCNA_00779at 840.536 kb on + strand, within CCNA_00779at 840.556 kb on + strand, within CCNA_00779at 840.600 kb on + strand, within CCNA_00779at 840.601 kb on + strand, within CCNA_00779at 840.601 kb on + strand, within CCNA_00779at 840.601 kb on + strand, within CCNA_00779at 840.601 kb on + strand, within CCNA_00779at 840.609 kb on - strand, within CCNA_00779at 840.609 kb on - strand, within CCNA_00779at 840.609 kb on - strand, within CCNA_00779at 840.616 kb on + strand, within CCNA_00779at 840.621 kb on + strand, within CCNA_00779at 840.621 kb on + strand, within CCNA_00779at 840.621 kb on + strand, within CCNA_00779at 840.629 kb on - strand, within CCNA_00779at 840.629 kb on - strand, within CCNA_00779at 840.637 kb on + strand, within CCNA_00779at 840.657 kb on + strand, within CCNA_00779at 840.670 kb on - strand, within CCNA_00779at 840.761 kb on - strandat 840.763 kb on + strandat 840.771 kb on - strandat 840.772 kb on + strandat 840.777 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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836,955 + CCNA_00777 0.66 +0.2
836,955 + CCNA_00777 0.66 +1.2
836,963 - CCNA_00777 0.66 +1.3
836,978 - CCNA_00777 0.67 +0.5
837,022 + CCNA_00777 0.68 +1.9
837,054 + CCNA_00777 0.70 +0.1
837,093 + +0.5
837,137 + CCNA_00777 0.73 -2.0
837,152 + CCNA_00777 0.74 +0.3
837,184 - CCNA_00777 0.75 -0.6
837,192 - CCNA_00777 0.75 +0.6
837,213 - CCNA_00777 0.76 +0.5
837,276 - CCNA_00777 0.79 +0.1
837,329 - CCNA_00777 0.81 +0.3
837,388 - CCNA_00777 0.84 -0.4
837,393 - CCNA_00777 0.84 +1.0
837,393 - CCNA_00777 0.84 -0.1
837,397 + CCNA_00777 0.84 -0.0
837,422 + CCNA_00777 0.85 +0.8
837,422 + CCNA_00777 0.85 -1.5
837,422 + CCNA_00777 0.85 -0.3
837,422 + CCNA_00777 0.85 +0.3
837,422 + CCNA_00777 0.85 -0.1
837,422 + CCNA_00777 0.85 -0.4
837,422 + CCNA_00777 0.85 -0.3
837,422 + CCNA_00777 0.85 -0.9
837,430 - CCNA_00777 0.85 +0.5
837,430 - CCNA_00777 0.85 -0.0
837,430 - CCNA_00777 0.85 +0.5
837,430 - CCNA_00777 0.85 +1.6
837,430 - CCNA_00777 0.85 -1.3
837,430 - CCNA_00777 0.85 +0.2
837,430 - CCNA_00777 0.85 -0.2
837,430 - CCNA_00777 0.85 -0.1
837,430 - CCNA_00777 0.85 +0.1
837,430 - CCNA_00777 0.85 +0.3
837,430 - CCNA_00777 0.85 +0.4
837,430 - CCNA_00777 0.85 -0.8
837,458 + CCNA_00777 0.86 -0.3
837,505 + CCNA_00777 0.88 +0.2
837,510 + CCNA_00777 0.89 -0.6
837,513 - CCNA_00777 0.89 -0.1
837,516 + CCNA_00777 0.89 -0.2
837,520 - CCNA_00777 0.89 -0.9
837,524 - CCNA_00777 0.89 +1.0
837,553 + -0.9
837,566 - -0.1
837,595 + +1.5
837,615 + -1.8
837,615 + +0.8
837,643 + +0.6
837,670 + -1.6
837,684 - -0.8
837,716 + -3.1
837,716 - +0.1
837,792 + -0.2
837,800 - -0.5
837,800 - -0.4
837,800 - -0.0
837,836 + +0.2
837,861 - +1.0
837,861 - -0.7
837,910 + +0.5
837,910 + -1.5
837,918 - +0.8
837,982 + -1.1
837,982 + +2.0
837,990 - -0.6
837,990 - +0.4
838,002 + +0.3
838,022 + -0.9
838,065 - -0.2
838,070 - -1.2
838,070 - -0.5
838,078 - -1.5
838,113 - -0.9
838,158 + CCNA_00778 0.12 -0.2
838,245 + CCNA_00778 0.16 -2.6
838,245 + CCNA_00778 0.16 -0.4
838,245 + CCNA_00778 0.16 -0.7
838,252 + CCNA_00778 0.17 +0.6
838,252 + CCNA_00778 0.17 -0.7
838,253 - CCNA_00778 0.17 +0.6
838,304 + CCNA_00778 0.20 +2.6
838,304 + CCNA_00778 0.20 +0.6
838,304 + CCNA_00778 0.20 -0.6
838,304 + CCNA_00778 0.20 +0.6
838,312 - CCNA_00778 0.20 -0.5
838,312 - CCNA_00778 0.20 +0.1
838,312 - CCNA_00778 0.20 -0.1
838,368 - CCNA_00778 0.23 -2.2
838,370 + -0.4
838,432 + CCNA_00778 0.27 -1.8
838,455 - CCNA_00778 0.28 +0.2
838,455 - CCNA_00778 0.28 -0.8
838,477 - CCNA_00778 0.29 -0.6
838,546 + CCNA_00778 0.33 -1.9
838,597 - CCNA_00778 0.36 +0.3
838,631 - CCNA_00778 0.37 -1.3
838,631 - CCNA_00778 0.37 -0.9
838,746 - CCNA_00778 0.44 -0.6
838,786 + CCNA_00778 0.46 -1.2
838,790 - CCNA_00778 0.46 +0.3
838,816 + CCNA_00778 0.47 -1.1
838,824 - CCNA_00778 0.48 -1.1
838,872 - CCNA_00778 0.51 +0.2
838,895 - CCNA_00778 0.52 -1.8
838,899 + CCNA_00778 0.52 -1.4
838,924 - CCNA_00778 0.53 -1.1
838,996 + CCNA_00778 0.57 -0.5
838,996 + CCNA_00778 0.57 -1.1
839,051 + CCNA_00778 0.60 +0.5
839,052 - CCNA_00778 0.60 -0.9
839,052 - CCNA_00778 0.60 -1.0
839,052 - CCNA_00778 0.60 -1.7
839,052 - CCNA_00778 0.60 -1.1
839,083 - CCNA_00778 0.62 -0.7
839,126 + CCNA_00778 0.64 +2.1
839,226 + CCNA_00778 0.70 -1.7
839,252 + CCNA_00778 0.71 -1.6
839,255 - CCNA_00778 0.71 -1.5
839,255 - CCNA_00778 0.71 -0.6
839,279 + CCNA_00778 0.73 +0.6
839,287 - CCNA_00778 0.73 -0.5
839,287 - CCNA_00778 0.73 -0.9
839,287 - CCNA_00778 0.73 -0.9
839,296 + CCNA_00778 0.74 -0.4
839,312 - CCNA_00778 0.75 -0.7
839,324 + CCNA_00778 0.75 -1.0
839,359 + CCNA_00778 0.77 +0.5
839,367 - CCNA_00778 0.78 +1.5
839,434 - CCNA_00778 0.81 -0.7
839,434 - CCNA_00778 0.81 -0.1
839,449 - CCNA_00778 0.82 +0.4
839,449 - CCNA_00778 0.82 -0.4
839,449 - CCNA_00778 0.82 -1.3
839,499 - CCNA_00778 0.85 -1.5
839,585 + CCNA_00778 0.89 -0.5
839,596 - -0.4
839,596 - +0.1
839,629 - -0.1
839,677 - -0.7
839,693 + -0.9
839,724 - -0.7
839,802 + -1.4
839,810 - -0.2
839,817 - -1.4
839,832 - -1.7
839,884 - +0.1
840,100 - +0.6
840,244 + -0.1
840,244 + +0.1
840,250 - +1.5
840,262 + -0.0
840,271 + +0.3
840,319 - -1.9
840,350 - -0.5
840,385 + -0.6
840,385 + +0.1
840,393 - CCNA_00779 0.12 -1.2
840,393 - CCNA_00779 0.12 +0.9
840,395 + CCNA_00779 0.12 +0.0
840,403 - CCNA_00779 0.14 +0.6
840,450 + CCNA_00779 0.26 +0.3
840,452 + CCNA_00779 0.27 -1.3
840,466 + CCNA_00779 0.30 +1.1
840,474 - CCNA_00779 0.32 -1.1
840,488 + CCNA_00779 0.36 +1.2
840,515 + CCNA_00779 0.42 -0.7
840,523 - CCNA_00779 0.44 +0.6
840,536 + CCNA_00779 0.48 +0.3
840,556 + CCNA_00779 0.52 +0.1
840,600 + CCNA_00779 0.63 +0.0
840,601 + CCNA_00779 0.64 +0.1
840,601 + CCNA_00779 0.64 +1.6
840,601 + CCNA_00779 0.64 -0.3
840,601 + CCNA_00779 0.64 -0.3
840,609 - CCNA_00779 0.66 -0.6
840,609 - CCNA_00779 0.66 +0.9
840,609 - CCNA_00779 0.66 +0.2
840,616 + CCNA_00779 0.67 +1.6
840,621 + CCNA_00779 0.69 -0.6
840,621 + CCNA_00779 0.69 -0.8
840,621 + CCNA_00779 0.69 -0.5
840,629 - CCNA_00779 0.71 -0.4
840,629 - CCNA_00779 0.71 -0.1
840,637 + CCNA_00779 0.73 +0.2
840,657 + CCNA_00779 0.78 +0.7
840,670 - CCNA_00779 0.81 +0.0
840,761 - +0.3
840,763 + -0.2
840,771 - -0.1
840,772 + -0.4
840,777 + +0.3

Or see this region's nucleotide sequence